The 2.0 version of rSNPBase

Variant report

Variant rs7719229
Chromosome Location chr5:108333853-108333854
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:28 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:108301600-108361200 Weak transcription Primary T cells from cord blood blood
2 chr5:108308400-108336000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr5:108319800-108340800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
4 chr5:108320000-108335000 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr5:108325800-108335400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr5:108327800-108334000 Weak transcription Right Ventricle heart
7 chr5:108328800-108342000 Weak transcription Right Atrium heart
8 chr5:108329400-108334000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr5:108329600-108346200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr5:108329600-108359600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr5:108330200-108336000 Weak transcription Brain Hippocampus Middle brain
12 chr5:108330200-108336400 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr5:108330200-108351800 Weak transcription Fetal Lung lung
14 chr5:108331200-108339400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr5:108332600-108359400 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr5:108332800-108359800 Weak transcription Adipose Nuclei Adipose
17 chr5:108333200-108334200 Strong transcription Fetal Stomach stomach
18 chr5:108333200-108334200 Strong transcription Skeletal Muscle Male skeletal muscle
19 chr5:108333400-108334000 Strong transcription Esophagus oesophagus
20 chr5:108333400-108334200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr5:108333400-108335200 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr5:108333400-108351600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr5:108333600-108334000 Strong transcription Fetal Muscle Trunk muscle
24 chr5:108333600-108334200 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr5:108333600-108334200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr5:108333600-108334200 ZNF genes & repeats Fetal Intestine Small intestine
27 chr5:108333600-108334400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr5:108333800-108334000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015