The 2.0 version of rSNPBase

Variant report

Variant rs73780406
Chromosome Location chr5:108357945-108357946
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:37 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:108301600-108361200 Weak transcription Primary T cells from cord blood blood
2 chr5:108329600-108359600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr5:108332600-108359400 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr5:108332800-108359800 Weak transcription Adipose Nuclei Adipose
5 chr5:108341000-108360000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
6 chr5:108341200-108359800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr5:108341800-108359400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr5:108342200-108359800 Weak transcription NHEK skin
9 chr5:108346400-108359800 Weak transcription Left Ventricle heart
10 chr5:108350400-108359800 Weak transcription Colon Smooth Muscle Colon
11 chr5:108350800-108390400 Weak transcription HSMMtube muscle
12 chr5:108351400-108359800 Weak transcription Pancreas Pancrea
13 chr5:108352000-108359800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr5:108352200-108359000 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr5:108352200-108359800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr5:108352200-108359800 Weak transcription Brain Angular Gyrus brain
17 chr5:108352200-108360000 Weak transcription Brain Anterior Caudate brain
18 chr5:108352400-108359400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr5:108352400-108360000 Weak transcription Brain Cingulate Gyrus brain
20 chr5:108352400-108365000 Weak transcription Fetal Intestine Large intestine
21 chr5:108352400-108381400 Weak transcription Fetal Lung lung
22 chr5:108352800-108359800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr5:108352800-108359800 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr5:108352800-108360000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr5:108353000-108360000 Weak transcription Fetal Adrenal Gland Adrenal Gland
26 chr5:108354800-108359800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr5:108355200-108363800 Weak transcription Muscle Satellite Cultured Cells --
28 chr5:108355600-108359800 Weak transcription Brain Hippocampus Middle brain
29 chr5:108356000-108399000 Weak transcription HSMM muscle
30 chr5:108356400-108364200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr5:108356400-108389200 Weak transcription Primary B cells from cord blood blood
32 chr5:108357600-108358200 ZNF genes & repeats Aorta Aorta
33 chr5:108357800-108358000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr5:108357800-108358000 Enhancers Lung lung
35 chr5:108357800-108358000 Enhancers Right Atrium heart
36 chr5:108357800-108358000 Enhancers Spleen Spleen
37 chr5:108357800-108358200 Enhancers HUVEC blood vessel

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Last update: Aug 31, 2015