Variant report

Variant	rs7732335
Chromosome Location	chr5:108275984-108275985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10043207	0.82[JPT][hapmap]
rs10062069	0.83[JPT][hapmap]
rs10515399	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11948270	0.81[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11950165	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11951285	0.81[EUR][1000 genomes]
rs11951595	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs11955924	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs11956572	0.81[EUR][1000 genomes]
rs11956900	0.86[EUR][1000 genomes]
rs11958129	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs11960268	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11960336	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11960400	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs12153527	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs12153646	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs1366081	0.83[JPT][hapmap]
rs1896582	0.83[JPT][hapmap]
rs2416197	0.83[JPT][hapmap]
rs28733366	0.81[ASN][1000 genomes]
rs3797818	1.00[ASN][1000 genomes]
rs3797819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3797820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3797821	1.00[ASN][1000 genomes]
rs3797823	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3797825	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3797832	0.83[JPT][hapmap]
rs3797833	0.82[JPT][hapmap]
rs3822684	0.82[CEU][hapmap]
rs4404726	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4957793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs55899933	0.90[EUR][1000 genomes]
rs56121551	0.91[ASN][1000 genomes]
rs56382548	0.81[EUR][1000 genomes]
rs57221554	0.81[EUR][1000 genomes]
rs57814250	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58499805	0.81[EUR][1000 genomes]
rs58647764	0.91[ASN][1000 genomes]
rs58729959	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60584949	0.81[EUR][1000 genomes]
rs60834821	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66623856	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66851282	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67053762	0.86[ASN][1000 genomes]
rs67586696	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6865572	0.83[JPT][hapmap]
rs6867147	0.86[EUR][1000 genomes]
rs6872299	0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6882759	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6884648	0.91[ASN][1000 genomes]
rs6893501	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6893984	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72789336	0.86[EUR][1000 genomes]
rs72789338	0.86[EUR][1000 genomes]
rs72789339	0.86[EUR][1000 genomes]
rs72790513	0.86[EUR][1000 genomes]
rs72790518	0.82[EUR][1000 genomes]
rs72790537	0.81[EUR][1000 genomes]
rs72790543	0.81[EUR][1000 genomes]
rs72790544	0.81[EUR][1000 genomes]
rs72790554	0.80[EUR][1000 genomes]
rs72790558	0.80[EUR][1000 genomes]
rs72790564	0.80[EUR][1000 genomes]
rs72793921	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73209364	0.94[ASN][1000 genomes]
rs73209368	0.93[ASN][1000 genomes]
rs73209370	0.90[ASN][1000 genomes]
rs73211527	0.90[ASN][1000 genomes]
rs73211528	0.90[ASN][1000 genomes]
rs73211549	0.91[ASN][1000 genomes]
rs73211553	0.91[ASN][1000 genomes]
rs73211559	0.91[ASN][1000 genomes]
rs73211560	0.91[ASN][1000 genomes]
rs73778332	0.94[ASN][1000 genomes]
rs73778336	0.90[ASN][1000 genomes]
rs73778344	0.91[ASN][1000 genomes]
rs73778358	0.91[ASN][1000 genomes]
rs73778371	0.86[EUR][1000 genomes]
rs73778394	0.81[EUR][1000 genomes]
rs73780406	0.80[EUR][1000 genomes]
rs73781924	0.80[EUR][1000 genomes]
rs7719638	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7723942	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726922	0.94[CEU][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs7731116	0.94[ASN][1000 genomes]
rs7731221	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7732510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7734110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7735749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1016343	chr5:108220116-108364687	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv882691	chr5:108229760-108366473	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108203800-108323400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:108217600-108323200	Weak transcription	Left Ventricle	heart
3	chr5:108221400-108280600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:108230200-108302400	Weak transcription	HSMM	muscle
5	chr5:108244200-108295000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:108247200-108277600	Weak transcription	Fetal Lung	lung
7	chr5:108250400-108277600	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:108254000-108311200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:108260600-108277600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:108268200-108280800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:108268400-108301400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:108270600-108289200	Weak transcription	K562	blood
13	chr5:108271200-108278800	Weak transcription	Ovary	ovary
14	chr5:108273400-108278600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links