Variant report
| Variant | rs12188107 |
|---|---|
| Chromosome Location | chr5:108352756-108352757 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:108301600-108361200 | Weak transcription | Primary T cells from cord blood | blood |
| 2 | chr5:108329600-108359600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 3 | chr5:108332600-108359400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 4 | chr5:108332800-108359800 | Weak transcription | Adipose Nuclei | Adipose |
| 5 | chr5:108341000-108360000 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 6 | chr5:108341200-108359800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 7 | chr5:108341800-108359400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 8 | chr5:108342200-108359800 | Weak transcription | NHEK | skin |
| 9 | chr5:108346400-108359800 | Weak transcription | Left Ventricle | heart |
| 10 | chr5:108349800-108357600 | Weak transcription | Aorta | Aorta |
| 11 | chr5:108350400-108359800 | Weak transcription | Colon Smooth Muscle | Colon |
| 12 | chr5:108350600-108352800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 13 | chr5:108350800-108390400 | Weak transcription | HSMMtube | muscle |
| 14 | chr5:108351400-108352800 | Enhancers | Ovary | ovary |
| 15 | chr5:108351400-108353000 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
| 16 | chr5:108351400-108359800 | Weak transcription | Pancreas | Pancrea |
| 17 | chr5:108351600-108352800 | Enhancers | Liver | Liver |
| 18 | chr5:108351600-108352800 | Enhancers | Fetal Intestine Small | intestine |
| 19 | chr5:108351600-108352800 | Enhancers | Rectal Mucosa Donor 31 | rectum |
| 20 | chr5:108351600-108352800 | Enhancers | Sigmoid Colon | Sigmoid Colon |
| 21 | chr5:108351600-108352800 | Enhancers | Dnd41 | blood |
| 22 | chr5:108351800-108352800 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 23 | chr5:108351800-108352800 | Enhancers | GM12878-XiMat | blood |
| 24 | chr5:108352000-108359800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 25 | chr5:108352200-108359000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 26 | chr5:108352200-108359800 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 27 | chr5:108352200-108359800 | Weak transcription | Brain Angular Gyrus | brain |
| 28 | chr5:108352200-108360000 | Weak transcription | Brain Anterior Caudate | brain |
| 29 | chr5:108352400-108359400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 30 | chr5:108352400-108360000 | Weak transcription | Brain Cingulate Gyrus | brain |
| 31 | chr5:108352400-108365000 | Weak transcription | Fetal Intestine Large | intestine |
| 32 | chr5:108352400-108381400 | Weak transcription | Fetal Lung | lung |
| 33 | chr5:108352600-108352800 | Enhancers | Primary T helper memory cells from peripheral blood 1 | blood |
| 34 | chr5:108352600-108352800 | Enhancers | Duodenum Mucosa | Duodenum |
