Variant report

Variant	rs7729380
Chromosome Location	chr5:108467114-108467115
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10043207	0.90[JPT][hapmap]
rs10062069	0.90[JPT][hapmap]
rs11948270	1.00[JPT][hapmap]
rs11948684	1.00[JPT][hapmap]
rs11950761	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11951285	0.90[JPT][hapmap]
rs11951595	1.00[JPT][hapmap]
rs11955924	1.00[JPT][hapmap]
rs11958129	1.00[JPT][hapmap]
rs11960400	1.00[JPT][hapmap]
rs12153527	1.00[JPT][hapmap]
rs12153646	1.00[JPT][hapmap]
rs1366081	0.90[JPT][hapmap]
rs1896582	0.90[JPT][hapmap]
rs2416197	0.91[JPT][hapmap]
rs3797832	0.90[JPT][hapmap]
rs3797833	0.90[JPT][hapmap]
rs3797834	1.00[JPT][hapmap]
rs3797837	1.00[JPT][hapmap]
rs3797844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3797847	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3797848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3797849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822684	1.00[JPT][hapmap]
rs3822685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59672639	1.00[ASN][1000 genomes]
rs59812973	1.00[ASN][1000 genomes]
rs6865572	0.91[JPT][hapmap]
rs6872299	1.00[JPT][hapmap]
rs6882698	1.00[JPT][hapmap]
rs6884133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6893501	1.00[JPT][hapmap]
rs72796601	1.00[ASN][1000 genomes]
rs72798567	1.00[ASN][1000 genomes]
rs72798568	1.00[ASN][1000 genomes]
rs7702557	1.00[JPT][hapmap]
rs7709840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714599	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7717569	1.00[ASN][1000 genomes]
rs7718925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733971	1.00[JPT][hapmap]
rs7734437	1.00[JPT][hapmap]
rs7737268	1.00[CEU][hapmap]
rs9885203	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv4953	chr5:108443905-108488747	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	esv2756048	chr5:108448101-108542101	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108442000-108497400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:108456800-108472800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:108462800-108468400	Weak transcription	Fetal Heart	heart
4	chr5:108463800-108468200	Weak transcription	Aorta	Aorta
5	chr5:108466600-108468200	Weak transcription	Gastric	stomach

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