Variant report

Variant	rs17161697
Chromosome Location	chr11:71627208-71627209
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1062452	0.82[MKK][hapmap]
rs17161699	1.00[ASW][hapmap];0.86[LWK][hapmap]
rs17161725	1.00[ASW][hapmap];0.92[LWK][hapmap];0.93[MKK][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes]
rs17161758	1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17161976	1.00[ASW][hapmap]
rs3887002	0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743665	1.00[AMR][1000 genomes]
rs7102639	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7106509	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114081	1.00[ASW][hapmap];0.84[LWK][hapmap]
rs7122209	1.00[ASW][hapmap];0.92[LWK][hapmap];0.93[MKK][hapmap];0.90[YRI][hapmap]
rs7125718	0.90[AFR][1000 genomes]
rs7929479	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931163	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949430	1.00[ASW][hapmap];0.92[LWK][hapmap]
rs9666358	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv2758276	chr11:71363639-71657576	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv2759836	chr11:71363639-71657576	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71587400-71627400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:71591400-71638200	Weak transcription	Right Ventricle	heart
3	chr11:71600000-71635800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:71606600-71638200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:71612800-71639000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:71614400-71638200	Weak transcription	Fetal Brain Male	brain
7	chr11:71614600-71638000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:71615200-71638600	Weak transcription	HUVEC	blood vessel
9	chr11:71621000-71630000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:71621200-71630200	Strong transcription	Fetal Stomach	stomach
11	chr11:71621600-71630200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:71621600-71630400	Strong transcription	Primary T cells from cord blood	blood
13	chr11:71621800-71630000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:71621800-71630000	Strong transcription	Fetal Muscle Leg	muscle
15	chr11:71621800-71630200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:71622400-71630200	Strong transcription	Thymus	Thymus
17	chr11:71622800-71627800	Strong transcription	Brain Inferior Temporal Lobe	brain
18	chr11:71622800-71629800	Strong transcription	Duodenum Mucosa	Duodenum
19	chr11:71622800-71630000	Strong transcription	Adipose Nuclei	Adipose
20	chr11:71622800-71630200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr11:71622800-71630200	Strong transcription	Fetal Lung	lung
22	chr11:71622800-71638200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:71623000-71628000	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr11:71623000-71628800	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:71623000-71629200	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr11:71623000-71630000	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:71623000-71630000	Strong transcription	Lung	lung
28	chr11:71623000-71630200	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr11:71623000-71630200	Strong transcription	Stomach Smooth Muscle	stomach
30	chr11:71623000-71630400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:71623200-71628400	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr11:71623200-71629200	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:71623200-71630000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:71623200-71630200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:71623400-71629800	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr11:71623400-71630200	Strong transcription	Fetal Intestine Large	intestine
37	chr11:71623600-71638200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:71623600-71638400	Weak transcription	NHEK	skin
39	chr11:71623800-71629200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:71623800-71630200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:71623800-71638400	Weak transcription	HMEC	breast
42	chr11:71624000-71629000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:71624000-71629400	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr11:71624000-71629600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr11:71624000-71629800	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr11:71624000-71630000	Strong transcription	Fetal Thymus	thymus
47	chr11:71624000-71630200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr11:71624000-71630200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:71624000-71630200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:71624000-71638200	Weak transcription	Muscle Satellite Cultured Cells	--

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