Variant report

Variant	rs7106509
Chromosome Location	chr11:71632198-71632199
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:71632065-71632289	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:71631302..71634139-chr11:71636145..71640575,4	MCF-7	breast:
2	chr11:71631417..71633807-chr11:71649240..71651743,2	K562	blood:
3	chr11:71631819..71635805-chr11:71636092..71639604,4	K562	blood:
4	chr11:71625390..71628859-chr11:71630770..71634219,4	K562	blood:

Variant related genes	Relation type
ENSG00000254469	TF binding region
ENSG00000255296	Chromatin interaction
ENSG00000137522	Chromatin interaction
ENSG00000254469	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17161697	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17161725	1.00[AFR][1000 genomes]
rs17161758	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3887002	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743665	1.00[AMR][1000 genomes]
rs7102639	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125718	0.87[AFR][1000 genomes]
rs7929479	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931163	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9666358	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv2758276	chr11:71363639-71657576	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv2759836	chr11:71363639-71657576	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71591400-71638200	Weak transcription	Right Ventricle	heart
2	chr11:71600000-71635800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:71606600-71638200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:71612800-71639000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:71614400-71638200	Weak transcription	Fetal Brain Male	brain
6	chr11:71614600-71638000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:71615200-71638600	Weak transcription	HUVEC	blood vessel
8	chr11:71622800-71638200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:71623600-71638200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:71623600-71638400	Weak transcription	NHEK	skin
11	chr11:71623800-71638400	Weak transcription	HMEC	breast
12	chr11:71624000-71638200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:71624000-71638800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:71624400-71638600	Weak transcription	NHLF	lung
15	chr11:71625200-71632600	Weak transcription	HSMM	muscle
16	chr11:71625600-71638800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:71625600-71639000	Weak transcription	Small Intestine	intestine
18	chr11:71626200-71638400	Weak transcription	NHDF-Ad	bronchial
19	chr11:71626200-71638600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:71626800-71638600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:71627200-71638400	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:71627400-71638200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:71627400-71638200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:71627400-71638400	Weak transcription	Osteobl	bone
25	chr11:71627400-71638800	Weak transcription	Brain Angular Gyrus	brain
26	chr11:71627400-71638800	Weak transcription	HSMMtube	muscle
27	chr11:71627600-71638200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:71627600-71638200	Weak transcription	Brain Germinal Matrix	brain
29	chr11:71627600-71638200	Weak transcription	Fetal Heart	heart
30	chr11:71627600-71638200	Weak transcription	K562	blood
31	chr11:71627600-71638600	Weak transcription	NH-A	brain
32	chr11:71627600-71638800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:71627800-71638200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:71627800-71638200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:71627800-71638200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:71627800-71638200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:71627800-71638200	Weak transcription	GM12878-XiMat	blood
38	chr11:71627800-71638200	Weak transcription	HepG2	liver
39	chr11:71627800-71638400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:71627800-71638800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:71627800-71638800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:71627800-71638800	Weak transcription	Colonic Mucosa	Colon
43	chr11:71627800-71638800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:71628000-71638200	Weak transcription	Hela-S3	cervix
45	chr11:71628000-71638600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:71628200-71638400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:71628200-71638600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr11:71628800-71638800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr11:71629000-71633400	Weak transcription	Fetal Brain Female	brain
50	chr11:71629000-71635800	Weak transcription	Placenta	Placenta

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