Variant report

Variant	rs17162209
Chromosome Location	chr1:223693162-223693163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10796478	0.94[ASN][1000 genomes]
rs11261301	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12124770	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4281321	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4402119	0.86[AFR][1000 genomes]
rs4421579	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4606305	0.81[AFR][1000 genomes]
rs6685101	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520420	chr1:223682051-223693162	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223691400-223699600	Weak transcription	Primary T cells from cord blood	blood
2	chr1:223693000-223693400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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