Variant report

Variant	rs4421579
Chromosome Location	chr1:223690077-223690078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10796478	0.94[ASN][1000 genomes]
rs11261301	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12124770	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17162209	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4281321	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4402119	0.85[AFR][1000 genomes]
rs4606305	0.80[AFR][1000 genomes]
rs6685101	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520420	chr1:223682051-223693162	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4421579	SLC30A10	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223685800-223690400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr1:223685800-223690600	Enhancers	Primary T cells fromperipheralblood	blood
3	chr1:223686200-223691200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr1:223686600-223690400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr1:223686800-223690400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:223686800-223690400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr1:223686800-223691200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:223687000-223690200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:223687000-223690400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr1:223687600-223690200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:223688600-223690600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr1:223689200-223690200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:223689200-223691400	Enhancers	Primary T cells from cord blood	blood
14	chr1:223689400-223690200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr1:223689400-223690200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:223689800-223690200	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links