Variant report

Variant	rs17163935
Chromosome Location	chr5:128113276-128113277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10061576	0.85[EUR][1000 genomes]
rs1019137	0.85[EUR][1000 genomes]
rs1034898	0.96[EUR][1000 genomes]
rs17163938	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs173515	0.93[EUR][1000 genomes]
rs247094	0.90[EUR][1000 genomes]
rs247101	0.88[EUR][1000 genomes]
rs247210	0.86[EUR][1000 genomes]
rs411769	0.90[EUR][1000 genomes]
rs7707591	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882836	chr5:127999225-128136519	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128104000-128113600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:128109200-128114000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:128109800-128114000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:128111600-128113600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:128112600-128113400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:128112600-128114200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr5:128112600-128114600	Enhancers	HUVEC	blood vessel
8	chr5:128112600-128114800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:128112600-128115400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:128112800-128114800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:128112800-128115000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:128112800-128115400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:128112800-128115400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:128113200-128113400	Flanking Active TSS	GM12878-XiMat	blood
15	chr5:128113200-128113600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr5:128113200-128114200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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