Variant report

Variant	rs17163938
Chromosome Location	chr5:128111342-128111343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10061576	0.85[EUR][1000 genomes]
rs1019137	0.85[EUR][1000 genomes]
rs1034898	0.96[EUR][1000 genomes]
rs17163935	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs173515	0.93[EUR][1000 genomes]
rs247094	0.90[EUR][1000 genomes]
rs247101	0.88[EUR][1000 genomes]
rs247210	0.86[EUR][1000 genomes]
rs411769	0.90[EUR][1000 genomes]
rs7707591	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882836	chr5:127999225-128136519	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128104000-128113600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:128109200-128114000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:128109800-128114000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:128110000-128112600	Weak transcription	HUVEC	blood vessel
5	chr5:128111000-128111800	Enhancers	Fetal Heart	heart
6	chr5:128111200-128111600	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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