Variant report

Variant	rs17164277
Chromosome Location	chr5:127525536-127525537
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127517957..127520508-chr5:127524959..127528123,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10036170	0.95[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10055519	1.00[AMR][1000 genomes]
rs10064377	1.00[AMR][1000 genomes]
rs10065431	1.00[AMR][1000 genomes]
rs10519975	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs17164360	1.00[AMR][1000 genomes]
rs6860829	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs6868281	1.00[AMR][1000 genomes]
rs6882728	1.00[AMR][1000 genomes]
rs73784511	1.00[AMR][1000 genomes]
rs73784516	1.00[AMR][1000 genomes]
rs9327470	0.94[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830482	chr5:127475398-127665377	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127441200-127536800	Weak transcription	Colonic Mucosa	Colon
2	chr5:127457600-127534400	Weak transcription	Pancreas	Pancrea
3	chr5:127463200-127533000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:127465400-127532200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:127468000-127536800	Weak transcription	Fetal Brain Female	brain
6	chr5:127478600-127531600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr5:127479200-127532200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr5:127480600-127532400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:127480600-127534400	Weak transcription	Gastric	stomach
10	chr5:127485000-127536800	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:127488600-127533200	Weak transcription	Stomach Mucosa	stomach
12	chr5:127490400-127532800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr5:127490800-127529200	Weak transcription	Aorta	Aorta
14	chr5:127490800-127536600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr5:127492200-127527200	Weak transcription	NHDF-Ad	bronchial
16	chr5:127493200-127529200	Weak transcription	Psoas Muscle	Psoas
17	chr5:127494400-127526800	Weak transcription	Fetal Lung	lung
18	chr5:127494400-127534800	Weak transcription	Liver	Liver
19	chr5:127494400-127536800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:127494600-127534400	Weak transcription	HUVEC	blood vessel
21	chr5:127496600-127525800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:127498400-127532200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr5:127499000-127532400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:127499000-127533400	Weak transcription	GM12878-XiMat	blood
25	chr5:127499200-127534600	Weak transcription	Lung	lung
26	chr5:127499400-127528400	Weak transcription	Fetal Intestine Small	intestine
27	chr5:127500400-127532400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr5:127500400-127536800	Weak transcription	NHEK	skin
29	chr5:127504600-127536800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr5:127508400-127533200	Weak transcription	A549	lung
31	chr5:127510000-127532600	Weak transcription	Fetal Heart	heart
32	chr5:127511000-127532400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr5:127511400-127535000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr5:127513000-127529200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr5:127514000-127529200	Weak transcription	HSMMtube	muscle
36	chr5:127514400-127533000	Weak transcription	NHLF	lung
37	chr5:127515400-127528600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:127515600-127529400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr5:127515600-127533200	Weak transcription	Fetal Muscle Leg	muscle
40	chr5:127516400-127528200	Weak transcription	Fetal Stomach	stomach
41	chr5:127516400-127536800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr5:127516600-127534600	Weak transcription	HMEC	breast
43	chr5:127516800-127534400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr5:127517200-127526800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr5:127517400-127532200	Weak transcription	K562	blood
46	chr5:127517600-127526600	Weak transcription	Brain Hippocampus Middle	brain
47	chr5:127517800-127525800	Weak transcription	Brain Germinal Matrix	brain
48	chr5:127518800-127526200	Strong transcription	Primary B cells from cord blood	blood
49	chr5:127518800-127527600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr5:127520000-127526200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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