Variant report

Variant	rs17164360
Chromosome Location	chr5:127446910-127446911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127418832..127420941-chr5:127446155..127448074,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000064651	Chromatin interaction
ENSG00000245937	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10036170	1.00[AMR][1000 genomes]
rs10055519	1.00[ASW][hapmap];0.86[LWK][hapmap];0.87[MKK][hapmap];1.00[AMR][1000 genomes]
rs10064377	1.00[AMR][1000 genomes]
rs10065431	1.00[AMR][1000 genomes]
rs10519975	0.86[ASW][hapmap];1.00[AMR][1000 genomes]
rs17164277	1.00[AMR][1000 genomes]
rs6860829	0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6862016	0.87[MKK][hapmap]
rs6868281	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6882728	1.00[AMR][1000 genomes]
rs73784511	1.00[AMR][1000 genomes]
rs73784516	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327470	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825644	chr5:127427533-127450581	Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127421400-127450200	Weak transcription	Fetal Thymus	thymus
2	chr5:127421600-127466800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:127423600-127494000	Weak transcription	K562	blood
4	chr5:127432400-127454600	Weak transcription	Fetal Kidney	kidney
5	chr5:127434400-127449000	Weak transcription	Dnd41	blood
6	chr5:127434800-127450600	Weak transcription	Fetal Intestine Small	intestine
7	chr5:127435000-127447600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:127435000-127447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:127435000-127448600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:127435000-127448600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:127435000-127449600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr5:127435200-127450400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:127435200-127450800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:127435600-127449400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:127437000-127449800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:127437200-127449800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr5:127437600-127447600	Weak transcription	Brain Anterior Caudate	brain
18	chr5:127437600-127447600	Weak transcription	NH-A	brain
19	chr5:127437800-127451600	Weak transcription	HMEC	breast
20	chr5:127438000-127450600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:127438400-127450200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr5:127439400-127447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:127439400-127450400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr5:127441200-127450600	Weak transcription	Aorta	Aorta
25	chr5:127441200-127536800	Weak transcription	Colonic Mucosa	Colon
26	chr5:127441400-127449600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr5:127441400-127450600	Weak transcription	Ovary	ovary
28	chr5:127441400-127450600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr5:127441400-127457400	Weak transcription	Stomach Mucosa	stomach
30	chr5:127441600-127450600	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:127441600-127450600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr5:127441800-127448400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr5:127441800-127450600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr5:127441800-127451000	Weak transcription	Colon Smooth Muscle	Colon
35	chr5:127442000-127449600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:127442400-127525000	Weak transcription	Right Ventricle	heart
37	chr5:127442800-127448800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr5:127443000-127457200	Weak transcription	Pancreas	Pancrea
39	chr5:127443000-127467000	Weak transcription	Esophagus	oesophagus
40	chr5:127443600-127450200	Weak transcription	Adipose Nuclei	Adipose
41	chr5:127443600-127450600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr5:127443800-127459800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr5:127444200-127449400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:127444400-127449000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr5:127444400-127449800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr5:127444400-127457600	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr5:127444600-127449000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr5:127445000-127447600	Weak transcription	NHEK	skin
49	chr5:127445200-127450600	Weak transcription	Lung	lung
50	chr5:127445200-127456600	Weak transcription	Spleen	Spleen

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