Variant report

Variant	rs17164856
Chromosome Location	chr7:11629388-11629389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17164893	1.00[CHB][hapmap]
rs17164916	1.00[CHB][hapmap]
rs17164934	1.00[CHB][hapmap]
rs17164937	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17164940	1.00[EUR][1000 genomes]
rs17164952	1.00[CHB][hapmap]
rs2883563	1.00[CHB][hapmap]
rs6953767	1.00[CHB][hapmap]
rs73676041	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11617600-11634000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:11619000-11634400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:11619200-11633400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:11623200-11633000	Weak transcription	Placenta	Placenta
5	chr7:11623800-11632800	Weak transcription	Liver	Liver
6	chr7:11624000-11631600	Weak transcription	Fetal Brain Male	brain
7	chr7:11624600-11632000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:11627200-11630000	Weak transcription	Fetal Lung	lung
9	chr7:11627200-11632800	Weak transcription	A549	lung
10	chr7:11627200-11633000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr7:11629200-11632800	Weak transcription	Pancreas	Pancrea
12	chr7:11629200-11632800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:11629200-11634000	Weak transcription	Fetal Stomach	stomach
14	chr7:11629200-11637800	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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