Variant report

Variant	rs2883563
Chromosome Location	chr7:11632712-11632713
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17164856	1.00[CHB][hapmap]
rs17164893	1.00[CHB][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17164916	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17164934	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17164937	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17164940	0.88[MKK][hapmap]
rs17164952	1.00[CHB][hapmap];0.85[GIH][hapmap];0.81[LWK][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950686	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953767	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6979249	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7457982	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11617600-11634000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:11619000-11634400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:11619200-11633400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:11623200-11633000	Weak transcription	Placenta	Placenta
5	chr7:11623800-11632800	Weak transcription	Liver	Liver
6	chr7:11627200-11632800	Weak transcription	A549	lung
7	chr7:11627200-11633000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:11629200-11632800	Weak transcription	Pancreas	Pancrea
9	chr7:11629200-11632800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:11629200-11634000	Weak transcription	Fetal Stomach	stomach
11	chr7:11629200-11637800	Weak transcription	Fetal Kidney	kidney
12	chr7:11630400-11644800	Weak transcription	Fetal Lung	lung
13	chr7:11630800-11633200	Enhancers	HUVEC	blood vessel
14	chr7:11631200-11632800	Weak transcription	Stomach Mucosa	stomach
15	chr7:11632000-11645000	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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