Variant report

Variant	rs17165950
Chromosome Location	chr5:97762437-97762438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10058574	0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs57200976	0.98[AFR][1000 genomes]
rs73143808	0.98[AFR][1000 genomes]
rs73143811	0.81[AFR][1000 genomes]
rs73143816	0.84[AFR][1000 genomes]
rs73143818	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv882409	chr5:97761687-97817930	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97755200-97763800	Weak transcription	Small Intestine	intestine
2	chr5:97755200-97764400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:97760200-97762600	Enhancers	Fetal Stomach	stomach
4	chr5:97760800-97763000	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr5:97761200-97762600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:97761200-97764400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:97761200-97764400	Enhancers	NHDF-Ad	bronchial
8	chr5:97761400-97767800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:97761600-97762600	Enhancers	Stomach Smooth Muscle	stomach
10	chr5:97761600-97763200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:97761600-97763400	Weak transcription	HSMM	muscle
12	chr5:97761600-97764400	Weak transcription	Osteobl	bone
13	chr5:97761800-97763800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:97761800-97764800	Weak transcription	HSMMtube	muscle
15	chr5:97762000-97762600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:97762000-97762800	Weak transcription	Fetal Muscle Leg	muscle
17	chr5:97762000-97763400	Weak transcription	NHLF	lung
18	chr5:97762000-97764800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:97762200-97767000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:97762400-97766600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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