Variant report

Variant	rs57200976
Chromosome Location	chr5:97736779-97736780
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10058574	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17165950	0.98[AFR][1000 genomes]
rs73143808	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143811	0.87[AMR][1000 genomes]
rs73143816	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143818	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97733400-97737200	Weak transcription	Osteobl	bone
2	chr5:97733800-97737000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:97734000-97736800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:97734400-97738600	Weak transcription	Brain Anterior Caudate	brain
5	chr5:97735600-97740000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:97736600-97739000	Enhancers	Stomach Smooth Muscle	stomach
7	chr5:97736600-97739000	Enhancers	HSMM	muscle
8	chr5:97736600-97739400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:97736600-97739400	Enhancers	Fetal Stomach	stomach
10	chr5:97736600-97739400	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links