Variant report

Variant	rs17167618
Chromosome Location	chr7:7466814-7466815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:7456758..7459628-chr7:7464929..7467571,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1024714	0.88[CHB][hapmap]
rs10486172	0.88[CHB][hapmap];0.97[ASN][1000 genomes]
rs17167528	0.85[CEU][hapmap];0.89[CHB][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17167926	1.00[ASW][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17168103	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17168311	0.86[CHB][hapmap];0.97[ASN][1000 genomes]
rs28490326	0.97[ASN][1000 genomes]
rs4035103	0.86[CHB][hapmap];0.97[ASN][1000 genomes]
rs4035105	0.88[CHB][hapmap];0.97[ASN][1000 genomes]
rs4503020	0.88[CHB][hapmap];0.94[CHD][hapmap];0.97[ASN][1000 genomes]
rs58336356	0.97[ASN][1000 genomes]
rs58681001	0.97[ASN][1000 genomes]
rs6945047	0.88[CHB][hapmap];0.93[ASN][1000 genomes]
rs6946354	0.88[CHB][hapmap];0.88[CHD][hapmap];0.97[ASN][1000 genomes]
rs6964593	0.85[CHB][hapmap];0.90[ASN][1000 genomes]
rs73334139	0.85[ASN][1000 genomes]
rs7787580	0.88[CHB][hapmap];0.90[ASN][1000 genomes]
rs7802944	0.88[CHB][hapmap];0.94[CHD][hapmap];0.97[ASN][1000 genomes]
rs929541	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023133	chr7:6854098-7516700	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv869091	chr7:6927461-7567820	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv949293	chr7:6990891-7711883	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv1032813	chr7:7053923-7497484	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv1030246	chr7:7053923-7569633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv1019498	chr7:7053923-7668373	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv538721	chr7:7053923-7668373	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
9	esv2758102	chr7:7209911-7493901	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	esv2759505	chr7:7209911-7493901	Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv887470	chr7:7310023-7655094	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	nsv606039	chr7:7317590-7497676	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1020988	chr7:7348251-7497484	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv887472	chr7:7405069-7680697	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
15	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
16	nsv1020181	chr7:7448657-7484862	Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7455200-7478600	Weak transcription	Pancreas	Pancrea
2	chr7:7464600-7467000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:7464600-7467800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:7464600-7467800	Weak transcription	Brain Anterior Caudate	brain
5	chr7:7464600-7467800	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:7464600-7467800	Weak transcription	Osteobl	bone
7	chr7:7464600-7468000	Weak transcription	HSMM	muscle
8	chr7:7464600-7468200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:7464600-7468200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:7464600-7468200	Weak transcription	NH-A	brain
11	chr7:7464600-7468800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:7464600-7469000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:7464600-7469400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr7:7464600-7471800	Weak transcription	Fetal Intestine Small	intestine
15	chr7:7464600-7472600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr7:7464600-7480200	Weak transcription	Aorta	Aorta
17	chr7:7465000-7468200	Weak transcription	NHLF	lung
18	chr7:7465000-7477800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:7465000-7478600	Weak transcription	Gastric	stomach
20	chr7:7465200-7468200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:7465400-7469600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:7465600-7468400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr7:7466000-7469600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:7466000-7469800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:7466000-7469800	Enhancers	NHDF-Ad	bronchial
26	chr7:7466400-7468000	Enhancers	Fetal Kidney	kidney
27	chr7:7466600-7467200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr7:7466600-7467200	Enhancers	Brain Cingulate Gyrus	brain
29	chr7:7466600-7467200	Enhancers	Ovary	ovary
30	chr7:7466600-7468000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:7466600-7468000	Enhancers	Brain Angular Gyrus	brain
32	chr7:7466600-7468000	Enhancers	Brain Hippocampus Middle	brain
33	chr7:7466600-7468200	Enhancers	Brain Substantia Nigra	brain
34	chr7:7466800-7467000	Enhancers	Small Intestine	intestine
35	chr7:7466800-7469600	Enhancers	Fetal Stomach	stomach
36	chr7:7466800-7469800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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