Variant report

Variant	rs17167684
Chromosome Location	chr7:13989464-13989465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:13987784..13990174-chr7:13991754..13993508,2	K562	blood:
2	chr7:13987872..13991716-chr7:13991871..13996241,5	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10264667	1.00[CEU][hapmap]
rs10950502	1.00[AFR][1000 genomes]
rs11765313	1.00[AFR][1000 genomes]
rs11768508	1.00[AFR][1000 genomes]
rs11772231	1.00[AFR][1000 genomes]
rs11772295	1.00[AFR][1000 genomes]
rs12154297	1.00[AFR][1000 genomes]
rs12154307	1.00[AFR][1000 genomes]
rs16878042	1.00[AFR][1000 genomes]
rs17167691	1.00[JPT][hapmap]
rs17167722	1.00[AFR][1000 genomes]
rs17167735	1.00[AFR][1000 genomes]
rs17167741	1.00[AFR][1000 genomes]
rs17167742	1.00[AFR][1000 genomes]
rs17167773	1.00[AFR][1000 genomes]
rs17167791	1.00[AFR][1000 genomes]
rs17167826	1.00[AFR][1000 genomes]
rs3801097	1.00[JPT][hapmap]
rs62452785	1.00[AFR][1000 genomes]
rs62452786	1.00[AFR][1000 genomes]
rs62452787	1.00[AFR][1000 genomes]
rs62452788	1.00[AFR][1000 genomes]
rs62452794	1.00[AFR][1000 genomes]
rs62452795	1.00[AFR][1000 genomes]
rs62452797	1.00[AFR][1000 genomes]
rs62452798	1.00[AFR][1000 genomes]
rs62452801	1.00[AFR][1000 genomes]
rs62452805	1.00[AFR][1000 genomes]
rs62452829	1.00[AFR][1000 genomes]
rs62452832	1.00[AFR][1000 genomes]
rs62452833	1.00[AFR][1000 genomes]
rs62454586	0.81[ASN][1000 genomes]
rs62454612	1.00[AFR][1000 genomes]
rs62454614	1.00[AFR][1000 genomes]
rs62454616	1.00[AFR][1000 genomes]
rs62454617	1.00[AFR][1000 genomes]
rs62454618	1.00[AFR][1000 genomes]
rs62454619	1.00[AFR][1000 genomes]
rs62454620	1.00[AFR][1000 genomes]
rs62454644	1.00[AFR][1000 genomes]
rs62454649	1.00[AFR][1000 genomes]
rs62454651	1.00[AFR][1000 genomes]
rs73052213	1.00[AFR][1000 genomes]
rs73054156	1.00[AFR][1000 genomes]
rs73057914	1.00[AFR][1000 genomes]
rs73057927	1.00[AFR][1000 genomes]
rs73059926	1.00[AFR][1000 genomes]
rs73059973	1.00[AFR][1000 genomes]
rs7349970	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1020310	chr7:13839681-14015794	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538738	chr7:13839681-14015794	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv887698	chr7:13841798-14056075	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1020543	chr7:13851470-14021121	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv887700	chr7:13948517-14042702	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv2761303	chr7:13988247-13991464	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13971400-13991600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:13971600-13989800	Weak transcription	Liver	Liver
3	chr7:13973400-13990000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:13975600-14003600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:13975600-14003600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:13975600-14013800	Weak transcription	Left Ventricle	heart
7	chr7:13978800-14004600	Weak transcription	Fetal Lung	lung
8	chr7:13979200-13998000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:13984200-13989800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:13985000-13989800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:13985800-14004600	Weak transcription	NHLF	lung
12	chr7:13986000-13994000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:13986200-13997000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:13988000-14012800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:13988200-13990000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr7:13988200-13990400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:13988200-14010400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:13988600-13989800	Weak transcription	Fetal Heart	heart
19	chr7:13988800-13989800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:13988800-13990000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:13988800-13990000	Enhancers	Fetal Intestine Large	intestine
22	chr7:13988800-13990000	Enhancers	Fetal Intestine Small	intestine
23	chr7:13988800-13990200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr7:13989000-13989600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr7:13989000-13989600	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr7:13989000-13990000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr7:13989000-13990200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr7:13989000-13990800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
29	chr7:13989000-13990800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:13989000-14019400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr7:13989200-13990000	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr7:13989400-14003600	Weak transcription	H1 Cell Line	embryonic stem cell

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