Variant report

Variant	rs17167737
Chromosome Location	chr7:7478348-7478349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr7:7478342-7479021	HCT-116	colon:	n/a	n/a
2	EP300	chr7:7478264-7479024	A549	lung:	n/a	n/a
3	MXI1	chr7:7478340-7479195	IMR90	lung:	n/a	n/a
4	FOSL2	chr7:7478327-7479132	SK-N-SH	brain:	n/a	chr7:7478707-7478715 chr7:7478705-7478716
5	ATF3	chr7:7478333-7478974	A549	lung:	n/a	n/a
6	FOSL2	chr7:7478181-7479139	A549	lung:	n/a	chr7:7478707-7478715 chr7:7478705-7478716
7	TCF12	chr7:7478289-7479676	SK-N-SH	brain:	n/a	n/a
8	CEBPB	chr7:7478008-7479033	IMR90	lung:	n/a	n/a
9	GATA3	chr7:7478260-7479207	A549	lung:	n/a	chr7:7478705-7478714
10	SP1	chr7:7478254-7479086	A549	lung:	n/a	n/a
11	REST	chr7:7478292-7478963	A549	lung:	n/a	n/a
12	PBX3	chr7:7478335-7479016	SK-N-SH	brain:	n/a	n/a
13	FOXA2	chr7:7478330-7478966	A549	lung:	n/a	chr7:7478596-7478608
14	FOSL1	chr7:7478332-7479171	HCT-116	colon:	n/a	chr7:7478707-7478715 chr7:7478705-7478716
15	FOXA1	chr7:7478331-7478792	T-47D	breast:	n/a	chr7:7478596-7478608
16	EP300	chr7:7478315-7479039	SK-N-SH	brain:	n/a	n/a
17	CEBPB	chr7:7478329-7479033	A549	lung:	n/a	n/a
18	TEAD4	chr7:7478262-7479027	A549	lung:	n/a	n/a
19	FOXA2	chr7:7478232-7479004	A549	lung:	n/a	chr7:7478596-7478608
20	SP1	chr7:7478248-7479044	A549	lung:	n/a	n/a
21	POLR2A	chr7:7478344-7479150	U87	brain:	n/a	n/a
22	JUND	chr7:7478287-7479099	HCT-116	colon:	n/a	chr7:7478705-7478716 chr7:7478707-7478715 chr7:7478705-7478716
23	SP1	chr7:7478330-7479123	HCT-116	colon:	n/a	n/a
24	MAX	chr7:7478330-7479066	A549	lung:	n/a	chr7:7478707-7478716
25	FOSL1	chr7:7478345-7479100	HCT-116	colon:	n/a	chr7:7478707-7478715 chr7:7478705-7478716
26	TCF12	chr7:7478096-7479185	A549	lung:	n/a	n/a
27	GATA3	chr7:7478269-7479123	SK-N-SH	brain:	n/a	chr7:7478705-7478714
28	JUND	chr7:7478261-7479142	HCT-116	colon:	n/a	chr7:7478705-7478716 chr7:7478707-7478715 chr7:7478705-7478716
29	RAD21	chr7:7478338-7479119	A549	lung:	n/a	n/a
30	MAX	chr7:7478330-7479009	A549	lung:	n/a	chr7:7478707-7478716
31	EP300	chr7:7478188-7479160	A549	lung:	n/a	chr7:7479094-7479108
32	JUND	chr7:7478328-7479107	SK-N-SH	brain:	n/a	chr7:7478705-7478716 chr7:7478707-7478715 chr7:7478705-7478716
33	GATA3	chr7:7478317-7479117	SK-N-SH	brain:	n/a	chr7:7478705-7478714
34	GABPA	chr7:7478321-7478976	A549	lung:	n/a	n/a
35	NFIC	chr7:7478245-7479109	SK-N-SH	brain:	n/a	n/a
36	RCOR1	chr7:7477994-7479131	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
COL28A1	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10085695	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10249422	0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10265808	0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17167720	0.86[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17167927	0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28492072	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28636895	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28680470	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023133	chr7:6854098-7516700	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv869091	chr7:6927461-7567820	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv949293	chr7:6990891-7711883	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv1032813	chr7:7053923-7497484	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv1030246	chr7:7053923-7569633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv1019498	chr7:7053923-7668373	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv538721	chr7:7053923-7668373	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
9	esv2758102	chr7:7209911-7493901	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	esv2759505	chr7:7209911-7493901	Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv887470	chr7:7310023-7655094	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	nsv606039	chr7:7317590-7497676	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1020988	chr7:7348251-7497484	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv887472	chr7:7405069-7680697	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
15	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
16	nsv1020181	chr7:7448657-7484862	Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv606043	chr7:7473563-7571420	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7455200-7478600	Weak transcription	Pancreas	Pancrea
2	chr7:7464600-7480200	Weak transcription	Aorta	Aorta
3	chr7:7465000-7478600	Weak transcription	Gastric	stomach
4	chr7:7467200-7478800	Weak transcription	Ovary	ovary
5	chr7:7468400-7484400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:7469600-7478800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:7469800-7478400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:7474200-7478400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:7474200-7478400	Weak transcription	HSMMtube	muscle
10	chr7:7474400-7483200	Weak transcription	Fetal Kidney	kidney
11	chr7:7474600-7478600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:7474600-7478800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:7477000-7480000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:7477000-7480200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr7:7477400-7479800	Enhancers	NHEK	skin
16	chr7:7477600-7479600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:7477600-7480200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:7477800-7480000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:7478000-7479000	Enhancers	Liver	Liver
20	chr7:7478000-7479600	Enhancers	HSMM	muscle
21	chr7:7478000-7479600	Enhancers	HUVEC	blood vessel
22	chr7:7478000-7479800	Enhancers	HMEC	breast
23	chr7:7478000-7479800	Enhancers	NHLF	lung
24	chr7:7478000-7479800	Enhancers	Osteobl	bone
25	chr7:7478000-7480000	Enhancers	NHDF-Ad	bronchial
26	chr7:7478200-7478600	Active TSS	A549	lung
27	chr7:7478200-7478800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:7478200-7479400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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