Variant report

Variant	rs17168827
Chromosome Location	chr7:15597996-15597997
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11979518	1.00[CHB][hapmap]
rs17336916	1.00[CHB][hapmap]
rs58470035	1.00[ASN][1000 genomes]
rs62438967	1.00[ASN][1000 genomes]
rs62438969	1.00[ASN][1000 genomes]
rs6461189	0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs916943	1.00[ASN][1000 genomes]
rs978897	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978898	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv606297	chr7:15582208-15621650	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv3411551	chr7:15585761-15600479	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15593400-15600600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr7:15594000-15599000	Weak transcription	Brain Angular Gyrus	brain
3	chr7:15594200-15598600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:15594200-15599000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:15594200-15601200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:15594400-15598600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:15595400-15598800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:15595400-15601400	Weak transcription	Fetal Lung	lung
9	chr7:15597000-15598800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:15597000-15599200	Weak transcription	Fetal Intestine Small	intestine
11	chr7:15597000-15600800	Weak transcription	Right Atrium	heart
12	chr7:15597200-15598800	Weak transcription	Brain Anterior Caudate	brain
13	chr7:15597200-15598800	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:15597200-15598800	Weak transcription	Brain Substantia Nigra	brain
15	chr7:15597200-15598800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:15597200-15598800	Weak transcription	HUVEC	blood vessel
17	chr7:15597200-15599600	Flanking Active TSS	Liver	Liver
18	chr7:15597200-15601400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:15597200-15601400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:15597400-15598200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:15597400-15598200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:15597600-15598000	Flanking Active TSS	A549	lung
23	chr7:15597600-15598800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:15597600-15598800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr7:15597600-15599000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:15597600-15600600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr7:15597800-15598000	Flanking Active TSS	NHDF-Ad	bronchial
28	chr7:15597800-15598600	Weak transcription	Adipose Nuclei	Adipose
29	chr7:15597800-15598800	Weak transcription	Osteobl	bone

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