Variant report

Variant	rs916943
Chromosome Location	chr7:15593768-15593769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:15365402..15367803-chr7:15593636..15595869,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11979518	1.00[CHB][hapmap]
rs17168827	1.00[ASN][1000 genomes]
rs17336916	1.00[CHB][hapmap]
rs58470035	1.00[ASN][1000 genomes]
rs62438967	1.00[ASN][1000 genomes]
rs62438969	1.00[ASN][1000 genomes]
rs6461189	1.00[ASN][1000 genomes]
rs978897	1.00[ASN][1000 genomes]
rs978898	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032569	chr7:14905287-15597069	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv606297	chr7:15582208-15621650	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	esv3411551	chr7:15585761-15600479	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15593000-15594600	Enhancers	Fetal Intestine Small	intestine
2	chr7:15593000-15596800	Enhancers	HUVEC	blood vessel
3	chr7:15593400-15594000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:15593400-15594000	Enhancers	HSMM	muscle
5	chr7:15593400-15594200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:15593400-15594200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:15593400-15594200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:15593400-15594200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:15593400-15594400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:15593400-15594600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:15593400-15594800	Enhancers	Brain Substantia Nigra	brain
12	chr7:15593400-15595400	Enhancers	Osteobl	bone
13	chr7:15593400-15596400	Enhancers	NHDF-Ad	bronchial
14	chr7:15593400-15600600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr7:15593600-15593800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:15593600-15593800	Flanking Active TSS	Liver	Liver
17	chr7:15593600-15593800	Enhancers	Brain Angular Gyrus	brain
18	chr7:15593600-15593800	Active TSS	A549	lung
19	chr7:15593600-15594000	Enhancers	Adipose Nuclei	Adipose
20	chr7:15593600-15594200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr7:15593600-15594200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:15593600-15594200	Enhancers	NH-A	brain
23	chr7:15593600-15594400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr7:15593600-15594400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links