Variant report

Variant	rs17169016
Chromosome Location	chr7:136944321-136944322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10435425	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10435428	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11561959	1.00[ASW][hapmap]
rs11763248	0.94[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11764598	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs11772240	0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11772540	0.83[EUR][1000 genomes]
rs16874924	1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4142090	0.94[CHB][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs56280054	0.94[EUR][1000 genomes]
rs56926299	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs57537216	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72611536	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72611537	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72611538	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs891586	0.82[GIH][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs891587	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv889238	chr7:136915059-136989606	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889239	chr7:136923730-136994013	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136927200-136950000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:136936800-136951600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:136938200-136980600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:136939000-136954600	Weak transcription	Fetal Stomach	stomach
5	chr7:136939200-136951800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:136940600-136946400	Weak transcription	Brain Substantia Nigra	brain
7	chr7:136940600-136957000	Weak transcription	Brain Angular Gyrus	brain
8	chr7:136941200-136949200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:136941400-136947200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:136943000-136946400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:136943000-136946400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:136943000-136946600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:136943000-136946600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:136943000-136946600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:136943200-136945800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr7:136943200-136947400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:136943400-136944400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr7:136943400-136945000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:136943800-136944800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:136943800-136945400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:136943800-136949600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:136944000-136946000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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