Variant report

Variant	rs4142090
Chromosome Location	chr7:136925134-136925135
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:136915740..136917893-chr7:136923118..136925670,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10435425	0.94[CHB][hapmap];1.00[CHD][hapmap]
rs10435428	0.94[CHB][hapmap];0.91[EUR][1000 genomes]
rs11763248	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11764598	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs11772240	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11772540	0.89[EUR][1000 genomes]
rs16874924	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs17169016	0.94[CHB][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs56280054	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57537216	0.93[EUR][1000 genomes]
rs72611536	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72611537	0.92[EUR][1000 genomes]
rs72611538	0.93[EUR][1000 genomes]
rs891586	0.92[CEU][hapmap];0.88[CHB][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs891587	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv608464	chr7:136882925-136935459	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv608465	chr7:136888610-136935459	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889238	chr7:136915059-136989606	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv889239	chr7:136923730-136994013	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136902000-136933800	Weak transcription	Fetal Brain Female	brain
2	chr7:136906600-136925200	Weak transcription	Fetal Stomach	stomach
3	chr7:136909600-136935800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:136909800-136926200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:136909800-136943000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:136911000-136927000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:136911200-136925800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:136911600-136936400	Weak transcription	Fetal Heart	heart
9	chr7:136913400-136937200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:136915200-136935000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:136920200-136939000	Weak transcription	Fetal Kidney	kidney
12	chr7:136922400-136935600	Weak transcription	Placenta	Placenta
13	chr7:136923000-136926600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:136923000-136928000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:136923200-136925400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:136923200-136926600	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:136923200-136939600	Weak transcription	Brain Angular Gyrus	brain
18	chr7:136923200-136940200	Weak transcription	Brain Substantia Nigra	brain
19	chr7:136923600-136937800	Weak transcription	Brain Germinal Matrix	brain
20	chr7:136923800-136937600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr7:136924000-136927000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:136924000-136933800	Weak transcription	Brain Anterior Caudate	brain
23	chr7:136924000-136936800	Weak transcription	Brain Hippocampus Middle	brain
24	chr7:136924000-136939800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:136924000-136939800	Weak transcription	Fetal Intestine Small	intestine
26	chr7:136924400-136939200	Weak transcription	Aorta	Aorta
27	chr7:136924600-136941400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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