Variant report

Variant	rs17169022
Chromosome Location	chr7:136960590-136960591
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10264510	0.86[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs16874934	1.00[ASW][hapmap]
rs1880791	1.00[ASW][hapmap]
rs188915	0.92[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs322245	0.81[JPT][hapmap]
rs322246	0.89[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs35822768	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61525640	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72611540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72611541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72611542	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv889238	chr7:136915059-136989606	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889239	chr7:136923730-136994013	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136938200-136980600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:136949000-136960800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:136952200-136971000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:136957200-136960800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:136959800-136960800	Enhancers	Brain Angular Gyrus	brain
6	chr7:136959800-136961000	Enhancers	Brain Cingulate Gyrus	brain
7	chr7:136960000-136960800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr7:136960000-136961000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:136960000-136961000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:136960200-136960600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:136960400-136960800	Enhancers	Brain Hippocampus Middle	brain
12	chr7:136960400-136961000	Enhancers	Brain Substantia Nigra	brain
13	chr7:136960400-136961200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:136960400-136961400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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