Variant report

Variant	rs72611542
Chromosome Location	chr7:136961189-136961190
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:136960021..136961767-chr7:136965044..136967236,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10264510	0.80[ASN][1000 genomes]
rs17169022	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs188915	0.80[ASN][1000 genomes]
rs322246	0.81[ASN][1000 genomes]
rs35822768	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61525640	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72611540	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72611541	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv889238	chr7:136915059-136989606	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889239	chr7:136923730-136994013	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136938200-136980600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:136952200-136971000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:136960400-136961200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:136960400-136961400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:136960600-136961200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:136960600-136961400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:136960600-136961400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:136960600-136961400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:136960800-136961400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:136960800-136961400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr7:136960800-136961400	Active TSS	Brain Anterior Caudate	brain
12	chr7:136960800-136961400	Flanking Active TSS	Brain Hippocampus Middle	brain
13	chr7:136960800-136961400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr7:136960800-136961400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr7:136960800-136961600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:136961000-136961200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:136961000-136961200	Active TSS	Brain Angular Gyrus	brain
18	chr7:136961000-136961400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:136961000-136961600	Active TSS	Brain Cingulate Gyrus	brain
20	chr7:136961000-136961600	Flanking Active TSS	Brain Substantia Nigra	brain
21	chr7:136961000-136962600	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links