Variant report

Variant	rs17169410
Chromosome Location	chr7:16342613-16342614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:16342552-16342680	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16332474..16335082-chr7:16341108..16343730,3	K562	blood:
2	chr7:16335290..16339651-chr7:16341311..16343633,4	K562	blood:

Variant related genes	Relation type
ISPD	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10224948	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234224	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235920	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243261	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250496	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251007	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251027	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254098	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261486	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274297	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277459	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278547	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974846	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981685	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17169409	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17169415	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28468590	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28508309	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28793604	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4517017	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55665993	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57850085	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684122	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684128	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684158	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16313600-16348200	Weak transcription	Gastric	stomach
2	chr7:16333400-16349000	Weak transcription	Psoas Muscle	Psoas
3	chr7:16335400-16343800	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links