Variant report

Variant	rs17169415
Chromosome Location	chr7:16347490-16347491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16333849..16337358-chr7:16346440..16349011,3	K562	blood:
2	chr7:16346273..16347971-chr7:16353272..16356192,2	K562	blood:
3	chr7:16333754..16335349-chr7:16345715..16348508,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10224948	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234224	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235920	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243261	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250496	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251007	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251027	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254098	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274297	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277459	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278547	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974846	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17169409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17169410	0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28468590	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28508309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28793604	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4517017	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55665993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57850085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684122	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684158	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv2757215	chr7:16346139-16458474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv887744	chr7:16346213-16401190	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv887745	chr7:16346213-16405309	Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16313600-16348200	Weak transcription	Gastric	stomach
2	chr7:16333400-16349000	Weak transcription	Psoas Muscle	Psoas
3	chr7:16343800-16347600	Strong transcription	K562	blood
4	chr7:16347000-16347800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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