Variant report

Variant	rs17169417
Chromosome Location	chr7:16348830-16348831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16333849..16337358-chr7:16346440..16349011,3	K562	blood:
2	chr7:16348138..16350804-chr7:16362128..16364167,2	K562	blood:
3	chr7:16347978..16350861-chr7:16364873..16367398,2	K562	blood:
4	chr7:16348686..16351561-chr7:16354430..16357375,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10950610	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10950613	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10950614	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10950616	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11508469	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12155021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12531973	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12533801	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12539671	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs12540311	0.92[ASN][1000 genomes]
rs12666346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12666868	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1295139	0.85[CEU][hapmap]
rs13437646	0.89[ASN][1000 genomes]
rs13438718	0.85[ASN][1000 genomes]
rs17169426	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17169428	0.83[ASN][1000 genomes]
rs1921839	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3919476	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4001474	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4463323	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4615457	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55750250	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55966090	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56327615	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56815850	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57026722	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57381059	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58553783	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58877550	0.83[EUR][1000 genomes]
rs61227640	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61391935	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72506102	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73304492	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73306417	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73684129	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73684130	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7785481	0.87[ASN][1000 genomes]
rs7804654	0.86[ASN][1000 genomes]
rs9648214	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv2757215	chr7:16346139-16458474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv887744	chr7:16346213-16401190	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv887745	chr7:16346213-16405309	Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv887746	chr7:16348091-16401190	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv887747	chr7:16348091-16405309	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv8061	chr7:16348519-16405295	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3475733	chr7:16348798-16402304	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3475734	chr7:16348821-16402329	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3475732	chr7:16348828-16402264	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3475735	chr7:16348828-16402264	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16333400-16349000	Weak transcription	Psoas Muscle	Psoas
2	chr7:16347600-16356200	Weak transcription	K562	blood

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