Variant report

Variant	rs72506102
Chromosome Location	chr7:16337556-16337557
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16325178..16329293-chr7:16335508..16338297,3	K562	blood:
2	chr7:16328237..16331121-chr7:16335386..16337666,3	K562	blood:
3	chr7:16335290..16339651-chr7:16341311..16343633,4	K562	blood:
4	chr7:16332203..16333821-chr7:16335558..16338156,2	K562	blood:
5	chr7:16329621..16333476-chr7:16335490..16337666,4	K562	blood:
6	chr7:16333997..16336395-chr7:16337300..16340770,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10950610	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10950613	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10950614	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10950616	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11508469	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12155021	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12531973	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12533801	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12539671	0.91[ASN][1000 genomes]
rs12540311	0.89[ASN][1000 genomes]
rs12666346	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12666868	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13437646	0.92[ASN][1000 genomes]
rs13438718	0.88[ASN][1000 genomes]
rs17169417	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17169426	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17169428	0.88[ASN][1000 genomes]
rs1921839	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3919476	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4001474	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4463323	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4615457	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55750250	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55966090	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56327615	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56815850	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57026722	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57381059	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58553783	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58877550	0.81[EUR][1000 genomes]
rs61227640	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61391935	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73304492	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73306417	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73684129	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73684130	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7785481	0.91[ASN][1000 genomes]
rs7804654	0.89[ASN][1000 genomes]
rs9648214	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1022814	chr7:16262300-16339988	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	esv3393885	chr7:16337386-16338654	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16313600-16348200	Weak transcription	Gastric	stomach
2	chr7:16333400-16349000	Weak transcription	Psoas Muscle	Psoas
3	chr7:16335400-16343800	Weak transcription	K562	blood
4	chr7:16335600-16340000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:16336600-16339400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:16336800-16339200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:16337400-16338600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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