Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137801995..137804884-chr7:137807459..137809542,2	MCF-7	breast:
2	chr7:137801785..137804367-chr7:137806016..137808191,2	K562	blood:

Variant related genes	Relation type
ENSG00000233951	Chromatin interaction
ENSG00000266193	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10228772	0.89[EUR][1000 genomes]
rs10233399	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10233624	1.00[CEU][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10269530	1.00[TSI][hapmap]
rs17133402	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17169527	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2465921	0.88[EUR][1000 genomes]
rs55800323	0.94[EUR][1000 genomes]
rs59260549	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6942538	0.89[EUR][1000 genomes]
rs73155759	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155760	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73155764	0.89[EUR][1000 genomes]
rs73155770	0.94[EUR][1000 genomes]
rs73155772	0.94[EUR][1000 genomes]
rs73155775	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73155777	0.94[EUR][1000 genomes]
rs73155783	0.94[EUR][1000 genomes]
rs73155785	0.88[EUR][1000 genomes]
rs73155788	0.94[EUR][1000 genomes]
rs73155790	0.88[EUR][1000 genomes]
rs73155791	0.88[EUR][1000 genomes]
rs73155801	0.94[EUR][1000 genomes]
rs73157908	0.94[EUR][1000 genomes]
rs73157911	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137798600-137803800	Weak transcription	Right Atrium	heart
2	chr7:137802000-137806400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:137802000-137808800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:137802200-137809800	Weak transcription	Fetal Intestine Small	intestine
5	chr7:137802400-137804200	Weak transcription	HepG2	liver
6	chr7:137802400-137804600	Weak transcription	Liver	Liver

Quick Search: