Variant report

Variant	rs73155783
Chromosome Location	chr7:137822893-137822894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10228772	0.83[EUR][1000 genomes]
rs10233399	1.00[EUR][1000 genomes]
rs10233624	0.94[EUR][1000 genomes]
rs17133402	0.88[EUR][1000 genomes]
rs17169522	0.94[EUR][1000 genomes]
rs17169527	0.88[EUR][1000 genomes]
rs2465921	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55800323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59260549	0.88[EUR][1000 genomes]
rs6942538	0.83[EUR][1000 genomes]
rs73155759	0.94[EUR][1000 genomes]
rs73155760	1.00[EUR][1000 genomes]
rs73155764	0.83[EUR][1000 genomes]
rs73155770	1.00[EUR][1000 genomes]
rs73155772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155775	0.88[EUR][1000 genomes]
rs73155777	1.00[EUR][1000 genomes]
rs73155785	0.94[EUR][1000 genomes]
rs73155788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155790	0.94[EUR][1000 genomes]
rs73155791	0.94[EUR][1000 genomes]
rs73155801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157908	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv608471	chr7:137808839-137847598	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3342923	chr7:137815746-137835515	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137820200-137827800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:137822400-137823400	Flanking Active TSS	GM12878-XiMat	blood
3	chr7:137822800-137823200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:137822800-137827200	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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