Variant report

Variant	rs17170124
Chromosome Location	chr7:146219369-146219370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:146218663..146220182-chr7:146222082..146223804,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10225737	0.82[JPT][hapmap]
rs10255626	0.82[JPT][hapmap]
rs10260681	0.82[JPT][hapmap]
rs10264191	0.82[JPT][hapmap]
rs10264684	0.82[JPT][hapmap]
rs10277301	0.82[JPT][hapmap]
rs10487937	0.82[JPT][hapmap]
rs13437747	0.82[JPT][hapmap]
rs17170043	0.82[JPT][hapmap]
rs17170044	0.82[JPT][hapmap]
rs17170053	0.82[JPT][hapmap]
rs17170096	0.82[JPT][hapmap]
rs17170100	0.82[JPT][hapmap]
rs17170116	0.82[JPT][hapmap]
rs17170122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17170123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17170127	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17170133	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[YRI][hapmap]
rs1815174	0.82[JPT][hapmap]
rs1860681	0.82[JPT][hapmap]
rs1860683	0.82[JPT][hapmap]
rs2693406	1.00[CHD][hapmap]
rs347213	1.00[CHD][hapmap]
rs4437559	0.82[JPT][hapmap]
rs6464751	0.82[JPT][hapmap]
rs6464752	0.82[JPT][hapmap]
rs6942578	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs6968491	0.82[JPT][hapmap]
rs6969729	0.82[JPT][hapmap]
rs6973230	0.82[JPT][hapmap]
rs769344	0.82[JPT][hapmap]
rs7780559	0.82[JPT][hapmap]
rs7785552	0.82[JPT][hapmap]
rs7791697	0.82[JPT][hapmap]
rs7793483	0.82[JPT][hapmap]
rs7793489	0.82[JPT][hapmap]
rs7794540	0.82[JPT][hapmap]
rs7799181	0.82[JPT][hapmap]
rs7805444	0.82[JPT][hapmap]
rs7806934	0.82[JPT][hapmap]
rs7807111	0.82[JPT][hapmap]
rs7808440	0.82[JPT][hapmap]
rs7808563	0.82[JPT][hapmap]
rs801943	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs801967	1.00[JPT][hapmap]
rs965003	0.82[JPT][hapmap]
rs9691838	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1024679	chr7:146091479-146248268	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1017138	chr7:146102286-146318562	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv889390	chr7:146111034-146239545	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1028798	chr7:146138480-146318562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv889391	chr7:146168418-146389259	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv608931	chr7:146189057-146274427	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv608932	chr7:146189652-146244207	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv465186	chr7:146192877-146254660	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv608933	chr7:146192877-146254660	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1032959	chr7:146193191-146351005	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv608934	chr7:146195452-146267257	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv1021967	chr7:146199590-146413808	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv1015996	chr7:146202073-146419347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv934014	chr7:146212698-146400508	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv1019592	chr7:146216403-146254660	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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