Variant report

Variant	rs17170100
Chromosome Location	chr7:146168418-146168419
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10225737	0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs10229180	0.82[JPT][hapmap]
rs10233688	0.82[JPT][hapmap]
rs10240739	0.82[JPT][hapmap]
rs10241465	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs10242114	1.00[ASN][1000 genomes]
rs10250673	0.82[JPT][hapmap]
rs10251017	0.82[JPT][hapmap]
rs10254488	0.82[CEU][hapmap]
rs10255068	0.82[JPT][hapmap]
rs10255169	0.82[JPT][hapmap]
rs10255186	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs10255626	0.88[ASW][hapmap];0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs10255663	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs10260681	0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs10262823	0.82[JPT][hapmap]
rs10264191	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs10264684	1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap]
rs10276235	0.82[JPT][hapmap]
rs10277301	1.00[JPT][hapmap]
rs10279395	0.82[JPT][hapmap]
rs10281206	0.82[JPT][hapmap]
rs10487937	1.00[JPT][hapmap]
rs10952644	0.82[CEU][hapmap]
rs11978575	0.82[JPT][hapmap]
rs12386642	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs13437747	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs13438740	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs17133782	0.82[CEU][hapmap]
rs17170043	1.00[JPT][hapmap]
rs17170044	1.00[JPT][hapmap]
rs17170053	1.00[JPT][hapmap]
rs17170096	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17170116	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17170122	0.82[JPT][hapmap]
rs17170123	0.82[JPT][hapmap]
rs17170124	0.82[JPT][hapmap]
rs17170127	0.82[JPT][hapmap]
rs17170133	0.82[JPT][hapmap]
rs1815174	0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1860681	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1860683	1.00[JPT][hapmap]
rs2017528	1.00[JPT][hapmap]
rs2109695	0.82[JPT][hapmap]
rs28379982	0.91[ASN][1000 genomes]
rs28475380	1.00[ASN][1000 genomes]
rs28488088	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28512358	0.91[ASN][1000 genomes]
rs28549169	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2888374	0.82[CEU][hapmap]
rs4141649	0.82[JPT][hapmap]
rs4437559	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs58749345	0.88[ASN][1000 genomes]
rs61272215	1.00[ASN][1000 genomes]
rs6464748	0.82[JPT][hapmap]
rs6464749	0.82[JPT][hapmap]
rs6464751	1.00[JPT][hapmap]
rs6464752	1.00[JPT][hapmap]
rs6942578	0.82[JPT][hapmap]
rs6946502	0.82[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs6953850	1.00[JPT][hapmap]
rs6958305	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6958673	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs6968491	0.82[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs6969729	1.00[JPT][hapmap]
rs6972724	0.82[JPT][hapmap]
rs6973230	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6973797	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs73162171	0.84[ASN][1000 genomes]
rs73162193	0.83[ASN][1000 genomes]
rs73162194	0.83[ASN][1000 genomes]
rs73162195	0.88[ASN][1000 genomes]
rs73162196	0.88[ASN][1000 genomes]
rs73456810	1.00[ASN][1000 genomes]
rs769344	1.00[JPT][hapmap]
rs7778058	0.82[JPT][hapmap]
rs7779927	1.00[JPT][hapmap]
rs7780559	1.00[JPT][hapmap]
rs7783391	0.82[JPT][hapmap]
rs7785552	1.00[JPT][hapmap]
rs7790714	1.00[JPT][hapmap]
rs7791697	1.00[JPT][hapmap]
rs7793483	1.00[JPT][hapmap]
rs7793489	1.00[JPT][hapmap]
rs7794540	1.00[JPT][hapmap]
rs7795585	0.82[JPT][hapmap]
rs7796924	1.00[JPT][hapmap]
rs7798008	0.82[JPT][hapmap]
rs7799181	1.00[JPT][hapmap]
rs7805444	1.00[JPT][hapmap]
rs7806934	1.00[JPT][hapmap]
rs7807111	1.00[JPT][hapmap]
rs7808440	1.00[JPT][hapmap]
rs7808563	1.00[JPT][hapmap]
rs801943	0.82[JPT][hapmap]
rs801967	0.82[JPT][hapmap]
rs802506	0.82[JPT][hapmap]
rs802508	0.82[JPT][hapmap]
rs802511	0.82[JPT][hapmap]
rs802512	0.82[JPT][hapmap]
rs802513	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs802514	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs802526	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs802529	0.82[JPT][hapmap]
rs952732	0.82[JPT][hapmap]
rs965003	1.00[JPT][hapmap]
rs9691838	0.82[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv917027	chr7:146069317-146194011	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1024679	chr7:146091479-146248268	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1017138	chr7:146102286-146318562	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv889390	chr7:146111034-146239545	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1028798	chr7:146138480-146318562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv889391	chr7:146168418-146389259	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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