Variant report

Variant	rs6973797
Chromosome Location	chr7:146072817-146072818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10225737	1.00[JPT][hapmap]
rs10229180	0.82[JPT][hapmap]
rs10233688	0.82[JPT][hapmap]
rs10240739	0.82[JPT][hapmap]
rs10242114	0.88[ASN][1000 genomes]
rs10243984	0.88[ASN][1000 genomes]
rs10250673	0.82[JPT][hapmap]
rs10251017	0.82[JPT][hapmap]
rs10255068	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs10255186	0.88[ASN][1000 genomes]
rs10255626	1.00[JPT][hapmap]
rs10260681	1.00[JPT][hapmap]
rs10262823	0.82[JPT][hapmap]
rs10264191	1.00[JPT][hapmap]
rs10264684	1.00[JPT][hapmap]
rs10276235	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs10277301	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10279395	0.82[JPT][hapmap]
rs10281206	0.82[JPT][hapmap]
rs10282451	0.85[ASN][1000 genomes]
rs10487937	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11978575	0.82[JPT][hapmap]
rs13437747	1.00[JPT][hapmap]
rs17170043	1.00[JPT][hapmap]
rs17170044	1.00[JPT][hapmap]
rs17170053	1.00[JPT][hapmap]
rs17170096	1.00[JPT][hapmap]
rs17170100	1.00[JPT][hapmap]
rs17170116	1.00[JPT][hapmap]
rs1815174	1.00[JPT][hapmap]
rs1860681	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1860683	1.00[JPT][hapmap]
rs2017528	1.00[JPT][hapmap]
rs2109695	1.00[JPT][hapmap]
rs2693299	0.85[ASN][1000 genomes]
rs28379982	0.96[ASN][1000 genomes]
rs28475380	0.88[ASN][1000 genomes]
rs28488088	0.88[ASN][1000 genomes]
rs28512358	0.96[ASN][1000 genomes]
rs28549169	0.88[ASN][1000 genomes]
rs4141649	0.82[JPT][hapmap]
rs4437559	1.00[JPT][hapmap]
rs58749345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59186277	0.88[ASN][1000 genomes]
rs61272215	0.88[ASN][1000 genomes]
rs6464748	0.82[JPT][hapmap]
rs6464751	1.00[JPT][hapmap]
rs6464752	1.00[JPT][hapmap]
rs6946502	1.00[JPT][hapmap]
rs6953850	1.00[JPT][hapmap]
rs6958305	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6958673	1.00[JPT][hapmap]
rs6968491	1.00[JPT][hapmap]
rs6969729	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6972724	0.82[JPT][hapmap]
rs6973230	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73162171	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73162193	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73162194	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73162195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73162196	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73456810	0.88[ASN][1000 genomes]
rs769344	1.00[JPT][hapmap]
rs7778058	0.82[JPT][hapmap]
rs7779927	1.00[JPT][hapmap]
rs7780559	1.00[JPT][hapmap]
rs7783391	0.82[JPT][hapmap]
rs7785552	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7790714	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7791697	1.00[JPT][hapmap]
rs7793483	1.00[JPT][hapmap]
rs7793489	1.00[JPT][hapmap]
rs7794124	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7794540	1.00[JPT][hapmap]
rs7795585	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7796924	1.00[JPT][hapmap]
rs7798008	0.82[JPT][hapmap]
rs7799181	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7805444	1.00[JPT][hapmap]
rs7806934	1.00[JPT][hapmap]
rs7807111	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7808440	1.00[JPT][hapmap]
rs7808563	1.00[JPT][hapmap]
rs802506	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs802508	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs802510	0.84[ASN][1000 genomes]
rs802511	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs802512	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs802513	0.88[ASN][1000 genomes]
rs802514	0.88[ASN][1000 genomes]
rs802526	0.88[ASN][1000 genomes]
rs802527	0.88[ASN][1000 genomes]
rs802529	0.82[JPT][hapmap]
rs802558	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs802559	0.84[ASN][1000 genomes]
rs802571	0.82[JPT][hapmap]
rs965003	1.00[JPT][hapmap]
rs9691838	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv933136	chr7:145995920-146076835	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv889388	chr7:145998111-146082957	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv524528	chr7:145998111-146086322	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv889389	chr7:145998111-146121539	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv934010	chr7:146006146-146076835	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv933530	chr7:146016273-146076835	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv608929	chr7:146020936-146082957	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv608930	chr7:146025509-146081452	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv917027	chr7:146069317-146194011	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146072200-146073200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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