Variant report

Variant	rs10243984
Chromosome Location	chr7:145992945-145992946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:145988038..145989736-chr7:145992431..145994390,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10255068	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255186	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276235	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277301	0.89[ASN][1000 genomes]
rs10282451	0.89[ASN][1000 genomes]
rs2693299	0.96[ASN][1000 genomes]
rs28379982	0.84[ASN][1000 genomes]
rs28512358	0.84[ASN][1000 genomes]
rs58749345	0.88[ASN][1000 genomes]
rs59186277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958305	0.84[ASN][1000 genomes]
rs6973230	0.88[ASN][1000 genomes]
rs6973797	0.88[ASN][1000 genomes]
rs73162171	0.92[ASN][1000 genomes]
rs73162193	0.84[ASN][1000 genomes]
rs73162194	0.84[ASN][1000 genomes]
rs73162195	0.88[ASN][1000 genomes]
rs73162196	0.88[ASN][1000 genomes]
rs7790714	0.92[ASN][1000 genomes]
rs7794124	0.92[ASN][1000 genomes]
rs7795585	1.00[ASN][1000 genomes]
rs7807111	0.89[ASN][1000 genomes]
rs802506	1.00[ASN][1000 genomes]
rs802508	0.96[ASN][1000 genomes]
rs802510	0.96[ASN][1000 genomes]
rs802511	1.00[ASN][1000 genomes]
rs802512	1.00[ASN][1000 genomes]
rs802513	1.00[ASN][1000 genomes]
rs802514	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802526	1.00[ASN][1000 genomes]
rs802527	1.00[ASN][1000 genomes]
rs802558	0.96[ASN][1000 genomes]
rs802559	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1030541	chr7:145883107-146022564	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv933622	chr7:145935381-145995971	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv5993	chr7:145970629-146015976	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145992800-145993600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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