Variant report

Variant	rs28379982
Chromosome Location	chr7:146099169-146099170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:146077363..146079072-chr7:146098860..146101793,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10242114	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10243984	0.84[ASN][1000 genomes]
rs10255068	0.84[ASN][1000 genomes]
rs10255186	0.84[ASN][1000 genomes]
rs10276235	0.84[ASN][1000 genomes]
rs10277301	0.81[ASN][1000 genomes]
rs10282451	0.81[ASN][1000 genomes]
rs2693299	0.81[ASN][1000 genomes]
rs28475380	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28488088	0.91[ASN][1000 genomes]
rs28512358	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28549169	0.91[ASN][1000 genomes]
rs58749345	0.96[ASN][1000 genomes]
rs59186277	0.84[ASN][1000 genomes]
rs61272215	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6958305	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973230	0.96[ASN][1000 genomes]
rs6973797	0.96[ASN][1000 genomes]
rs73162171	0.92[ASN][1000 genomes]
rs73162193	0.91[ASN][1000 genomes]
rs73162194	0.91[ASN][1000 genomes]
rs73162195	0.96[ASN][1000 genomes]
rs73162196	0.96[ASN][1000 genomes]
rs73456810	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7790714	0.84[ASN][1000 genomes]
rs7794124	0.84[ASN][1000 genomes]
rs7795585	0.84[ASN][1000 genomes]
rs7807111	0.81[ASN][1000 genomes]
rs802506	0.84[ASN][1000 genomes]
rs802511	0.84[ASN][1000 genomes]
rs802512	0.84[ASN][1000 genomes]
rs802513	0.84[ASN][1000 genomes]
rs802514	0.84[ASN][1000 genomes]
rs802526	0.84[ASN][1000 genomes]
rs802527	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889389	chr7:145998111-146121539	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv917027	chr7:146069317-146194011	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1024679	chr7:146091479-146248268	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146089000-146109400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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