Variant report

Variant	rs2109695
Chromosome Location	chr7:146091479-146091480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10225737	0.82[JPT][hapmap]
rs10255626	0.82[JPT][hapmap]
rs10260681	0.82[JPT][hapmap]
rs10262298	0.99[ASN][1000 genomes]
rs10264191	0.82[JPT][hapmap]
rs10264684	0.82[JPT][hapmap]
rs10277301	0.82[JPT][hapmap]
rs10487936	0.89[EUR][1000 genomes]
rs10487937	0.82[JPT][hapmap]
rs12216694	0.83[TSI][hapmap]
rs12670728	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247443	0.90[EUR][1000 genomes]
rs13437747	0.82[JPT][hapmap]
rs1358083	0.96[YRI][hapmap]
rs1358084	0.99[ASN][1000 genomes]
rs1639477	0.99[ASN][1000 genomes]
rs1639480	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1639481	0.99[ASN][1000 genomes]
rs1639482	0.98[ASN][1000 genomes]
rs1639483	0.99[ASN][1000 genomes]
rs1639484	0.99[ASN][1000 genomes]
rs17170043	0.82[JPT][hapmap]
rs17170044	0.82[JPT][hapmap]
rs17170053	0.82[JPT][hapmap]
rs17170096	0.82[JPT][hapmap]
rs17170100	0.82[JPT][hapmap]
rs17170116	0.82[JPT][hapmap]
rs1718076	0.99[ASN][1000 genomes]
rs1718083	0.92[ASN][1000 genomes]
rs1718099	0.88[EUR][1000 genomes]
rs1724498	0.83[EUR][1000 genomes]
rs1724535	0.93[YRI][hapmap]
rs1815174	0.82[JPT][hapmap]
rs1860681	0.82[JPT][hapmap]
rs1860683	0.82[JPT][hapmap]
rs2058375	0.99[ASN][1000 genomes]
rs2058376	0.99[ASN][1000 genomes]
rs2058377	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2109696	0.89[EUR][1000 genomes]
rs2372492	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2535753	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2535754	0.88[EUR][1000 genomes]
rs34079621	0.89[EUR][1000 genomes]
rs34086340	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34137151	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34199552	0.95[EUR][1000 genomes]
rs34416126	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4109977	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4437559	0.82[JPT][hapmap]
rs4726785	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57803192	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6464751	0.82[JPT][hapmap]
rs6464752	0.82[JPT][hapmap]
rs6464758	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6951145	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6955314	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6958673	1.00[JPT][hapmap]
rs6968491	0.82[JPT][hapmap]
rs6969729	0.82[JPT][hapmap]
rs6973230	0.82[JPT][hapmap]
rs6973797	1.00[JPT][hapmap]
rs73164014	0.92[EUR][1000 genomes]
rs769344	0.82[JPT][hapmap]
rs7776593	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7779927	1.00[JPT][hapmap]
rs7780559	0.82[JPT][hapmap]
rs7780801	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7785552	0.82[JPT][hapmap]
rs7790657	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7791697	0.82[JPT][hapmap]
rs7793483	0.82[JPT][hapmap]
rs7793489	0.82[JPT][hapmap]
rs7794540	0.82[JPT][hapmap]
rs7796924	0.82[JPT][hapmap]
rs7799181	0.82[JPT][hapmap]
rs7805444	0.82[JPT][hapmap]
rs7806934	0.82[JPT][hapmap]
rs7807111	0.82[JPT][hapmap]
rs7808440	0.82[JPT][hapmap]
rs7808563	0.82[JPT][hapmap]
rs802194	0.92[EUR][1000 genomes]
rs802195	0.92[EUR][1000 genomes]
rs802196	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs965003	0.82[JPT][hapmap]
rs9691838	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889389	chr7:145998111-146121539	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv917027	chr7:146069317-146194011	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1024679	chr7:146091479-146248268	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146089000-146109400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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