Variant report
| Variant | rs6946502 |
|---|---|
| Chromosome Location | chr7:146172087-146172088 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:51)
| rs_ID | r2[population] |
|---|---|
| rs10225737 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10254488 | 1.00[CEU][hapmap] |
| rs10255626 | 1.00[JPT][hapmap];0.85[YRI][hapmap] |
| rs10260681 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10264191 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap] |
| rs10264684 | 1.00[JPT][hapmap] |
| rs10277301 | 1.00[JPT][hapmap] |
| rs10487937 | 1.00[JPT][hapmap] |
| rs10952644 | 1.00[CEU][hapmap] |
| rs13437747 | 1.00[JPT][hapmap] |
| rs17133782 | 1.00[CEU][hapmap] |
| rs17170043 | 1.00[JPT][hapmap] |
| rs17170044 | 1.00[JPT][hapmap] |
| rs17170053 | 1.00[JPT][hapmap] |
| rs17170096 | 0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap] |
| rs17170100 | 0.82[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap] |
| rs17170116 | 0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap] |
| rs1815174 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap] |
| rs1860681 | 1.00[JPT][hapmap] |
| rs1860683 | 1.00[JPT][hapmap] |
| rs2017528 | 1.00[JPT][hapmap] |
| rs2888374 | 1.00[CEU][hapmap] |
| rs41520144 | 1.00[JPT][hapmap] |
| rs4437559 | 1.00[JPT][hapmap] |
| rs6464751 | 1.00[JPT][hapmap] |
| rs6464752 | 1.00[JPT][hapmap] |
| rs6953850 | 1.00[JPT][hapmap] |
| rs6958305 | 1.00[JPT][hapmap] |
| rs6958673 | 1.00[JPT][hapmap];0.89[YRI][hapmap] |
| rs6968491 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6969729 | 1.00[JPT][hapmap] |
| rs6973230 | 1.00[JPT][hapmap] |
| rs6973797 | 1.00[JPT][hapmap] |
| rs769344 | 1.00[JPT][hapmap] |
| rs7779927 | 1.00[JPT][hapmap] |
| rs7780559 | 1.00[JPT][hapmap] |
| rs7785552 | 1.00[JPT][hapmap] |
| rs7790714 | 1.00[JPT][hapmap] |
| rs7791697 | 1.00[JPT][hapmap] |
| rs7793483 | 1.00[JPT][hapmap] |
| rs7793489 | 1.00[JPT][hapmap] |
| rs7794540 | 1.00[JPT][hapmap] |
| rs7796924 | 1.00[JPT][hapmap] |
| rs7799181 | 1.00[JPT][hapmap] |
| rs7805444 | 1.00[JPT][hapmap] |
| rs7806934 | 1.00[JPT][hapmap] |
| rs7807111 | 1.00[JPT][hapmap] |
| rs7808440 | 1.00[JPT][hapmap] |
| rs7808563 | 1.00[JPT][hapmap] |
| rs965003 | 1.00[JPT][hapmap] |
| rs9691838 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889384 | chr7:145541783-146239545 | Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1020950 | chr7:145683419-146264304 | Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv889387 | chr7:145903862-146239545 | Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv917027 | chr7:146069317-146194011 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv1024679 | chr7:146091479-146248268 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv1017138 | chr7:146102286-146318562 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 7 | nsv889390 | chr7:146111034-146239545 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 8 | nsv1028798 | chr7:146138480-146318562 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 9 | nsv889391 | chr7:146168418-146389259 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
