Variant report

Variant	rs11978575
Chromosome Location	chr7:145991412-145991413
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10225737	0.85[JPT][hapmap]
rs10229180	1.00[JPT][hapmap];0.91[YRI][hapmap]
rs10233688	1.00[JPT][hapmap]
rs10240739	1.00[JPT][hapmap];0.91[YRI][hapmap]
rs10241465	1.00[JPT][hapmap]
rs10243984	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251017	1.00[JPT][hapmap]
rs10255068	1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255169	1.00[JPT][hapmap]
rs10255186	1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255626	0.82[JPT][hapmap]
rs10255663	1.00[JPT][hapmap]
rs10260681	0.85[JPT][hapmap]
rs10262823	1.00[JPT][hapmap]
rs10264191	0.85[JPT][hapmap]
rs10264684	0.85[JPT][hapmap]
rs10276235	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277301	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs10279395	1.00[JPT][hapmap]
rs10281206	1.00[JPT][hapmap]
rs10282451	0.89[ASN][1000 genomes]
rs10487937	0.85[JPT][hapmap]
rs12386642	1.00[JPT][hapmap]
rs13437747	0.82[JPT][hapmap]
rs13438740	1.00[JPT][hapmap];0.95[YRI][hapmap]
rs17170043	0.85[JPT][hapmap]
rs17170044	0.85[JPT][hapmap]
rs17170053	0.85[JPT][hapmap]
rs17170096	0.85[JPT][hapmap]
rs17170100	0.82[JPT][hapmap]
rs17170116	0.85[JPT][hapmap]
rs1815174	0.85[JPT][hapmap]
rs1860681	0.82[JPT][hapmap]
rs1860683	0.85[JPT][hapmap]
rs2693299	0.96[ASN][1000 genomes]
rs28379982	0.84[ASN][1000 genomes]
rs28512358	0.84[ASN][1000 genomes]
rs4141649	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs4437559	0.82[JPT][hapmap]
rs58749345	0.88[ASN][1000 genomes]
rs59186277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464748	1.00[JPT][hapmap]
rs6464749	1.00[JPT][hapmap]
rs6464751	0.85[JPT][hapmap]
rs6464752	0.82[JPT][hapmap]
rs6958305	0.84[ASN][1000 genomes]
rs6958673	0.82[JPT][hapmap]
rs6968491	0.85[JPT][hapmap]
rs6969729	0.85[JPT][hapmap]
rs6973230	0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs6973797	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs73162171	0.92[ASN][1000 genomes]
rs73162193	0.84[ASN][1000 genomes]
rs73162194	0.84[ASN][1000 genomes]
rs73162195	0.88[ASN][1000 genomes]
rs73162196	0.88[ASN][1000 genomes]
rs769344	0.85[JPT][hapmap]
rs7778737	0.85[JPT][hapmap]
rs7779927	0.82[JPT][hapmap]
rs7780559	0.85[JPT][hapmap]
rs7783391	1.00[JPT][hapmap]
rs7785552	0.85[JPT][hapmap]
rs7790714	0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs7791697	0.85[JPT][hapmap]
rs7793483	0.85[JPT][hapmap]
rs7793489	0.85[JPT][hapmap]
rs7794124	0.92[ASN][1000 genomes]
rs7794540	0.85[JPT][hapmap]
rs7795585	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7796924	1.00[JPT][hapmap]
rs7798008	1.00[JPT][hapmap]
rs7799181	0.82[JPT][hapmap]
rs7805444	0.85[JPT][hapmap]
rs7806934	0.82[JPT][hapmap]
rs7807111	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs7808440	0.82[JPT][hapmap]
rs7808563	0.85[JPT][hapmap]
rs802506	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs802508	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs802510	0.96[ASN][1000 genomes]
rs802511	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs802512	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs802513	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs802514	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802526	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs802527	1.00[ASN][1000 genomes]
rs802529	1.00[JPT][hapmap]
rs802558	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs802559	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs802567	0.82[JPT][hapmap]
rs802568	0.85[JPT][hapmap]
rs802569	1.00[JPT][hapmap]
rs802570	1.00[JPT][hapmap]
rs802571	1.00[JPT][hapmap]
rs952732	1.00[JPT][hapmap]
rs965003	0.82[JPT][hapmap]
rs9691838	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1030541	chr7:145883107-146022564	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv933622	chr7:145935381-145995971	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1015596	chr7:145942590-145992294	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv5993	chr7:145970629-146015976	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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