Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10232000	0.80[JPT][hapmap]
rs11769528	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13227256	1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13438256	0.90[JPT][hapmap]
rs17170271	0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2041417	0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2109526	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2392232	0.86[ASN][1000 genomes]
rs35822718	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3779239	0.95[JPT][hapmap]
rs3823763	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs3884597	0.90[JPT][hapmap]
rs4604335	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4723289	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944723	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs71532578	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs740888	1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7798938	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs961679	0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs9639675	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs9784973	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830945	chr7:33526648-33670592	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33510800-33533200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:33516400-33530800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:33520000-33534800	Weak transcription	Aorta	Aorta
4	chr7:33525600-33527400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:33525800-33528400	Enhancers	GM12878-XiMat	blood
6	chr7:33526400-33531400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:33526600-33530600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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