Variant report

Variant	rs2392232
Chromosome Location	chr7:33436836-33436837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11769528	0.86[ASN][1000 genomes]
rs13227256	0.86[ASN][1000 genomes]
rs17170269	0.86[ASN][1000 genomes]
rs2109526	0.88[ASN][1000 genomes]
rs35822718	0.86[ASN][1000 genomes]
rs3823763	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4604335	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4723289	0.86[ASN][1000 genomes]
rs6944723	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71532578	0.88[ASN][1000 genomes]
rs740888	0.81[ASN][1000 genomes]
rs7798938	0.86[ASN][1000 genomes]
rs961679	0.99[ASN][1000 genomes]
rs9639675	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33389000-33437400	Weak transcription	Liver	Liver
2	chr7:33403400-33437800	Weak transcription	Brain Substantia Nigra	brain
3	chr7:33418000-33438600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:33420400-33444600	Weak transcription	Left Ventricle	heart
5	chr7:33420600-33437800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr7:33420600-33449200	Weak transcription	Ovary	ovary
7	chr7:33420800-33437400	Weak transcription	Fetal Intestine Large	intestine
8	chr7:33420800-33437800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr7:33421000-33439800	Weak transcription	Fetal Stomach	stomach
10	chr7:33421000-33442600	Weak transcription	Pancreas	Pancrea
11	chr7:33422200-33452200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:33422600-33437800	Weak transcription	Brain Angular Gyrus	brain
13	chr7:33428200-33438200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:33428200-33458000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr7:33435400-33441800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:33435600-33437200	Weak transcription	Fetal Lung	lung
17	chr7:33435600-33439200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr7:33435800-33439400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:33436400-33437200	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr7:33436600-33437000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:33436600-33438800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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