Variant report
| Variant | rs17170500 |
|---|---|
| Chromosome Location | chr7:147142281-147142282 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs10500189 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs1525223 | 1.00[YRI][hapmap] |
| rs17170475 | 1.00[AMR][1000 genomes] |
| rs6950313 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs6950773 | 1.00[AMR][1000 genomes] |
| rs7782763 | 1.00[AMR][1000 genomes] |
| rs7799221 | 0.83[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv608954 | chr7:147104887-147145576 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
