Variant report

Variant	rs17170811
Chromosome Location	chr7:147748648-147748649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1006506	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs16883780	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs16883800	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs17170777	1.00[CHB][hapmap];0.89[CHD][hapmap];0.86[ASN][1000 genomes]
rs17170785	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17170800	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17170802	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170805	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170806	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170809	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040881	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28522281	0.89[ASN][1000 genomes]
rs4443578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4725762	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464851	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs66949315	0.89[ASN][1000 genomes]
rs73168548	0.89[ASN][1000 genomes]
rs73468147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73470220	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786651	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9691133	1.00[CHB][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147748200-147748800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:147748200-147749000	Active TSS	Monocytes-CD14+_RO01746	blood
3	chr7:147748400-147748800	Flanking Active TSS	Adipose Nuclei	Adipose
4	chr7:147748400-147748800	Active TSS	Liver	Liver
5	chr7:147748400-147748800	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr7:147748400-147748800	Flanking Active TSS	Fetal Lung	lung
7	chr7:147748400-147748800	Active TSS	Osteobl	bone
8	chr7:147748400-147749000	Active TSS	Primary monocytes fromperipheralblood	blood
9	chr7:147748400-147749000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:147748400-147749600	Active TSS	GM12878-XiMat	blood
11	chr7:147748600-147748800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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