Variant report

Variant	rs1006506
Chromosome Location	chr7:147716469-147716470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1006505	0.96[CEU][hapmap]
rs10266911	0.96[CEU][hapmap]
rs10275164	0.96[CEU][hapmap]
rs12532290	0.87[YRI][hapmap]
rs12703987	0.85[ASN][1000 genomes]
rs16883780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883800	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17170777	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17170800	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17170802	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17170805	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17170806	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17170807	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs17170809	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17170811	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2040881	0.89[ASN][1000 genomes]
rs2246605	0.84[JPT][hapmap]
rs2250061	0.86[JPT][hapmap]
rs2254307	0.84[JPT][hapmap]
rs2373276	0.86[JPT][hapmap]
rs2373277	0.86[JPT][hapmap]
rs2707579	0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs2707593	0.84[JPT][hapmap]
rs2708249	0.86[JPT][hapmap]
rs2708252	0.85[JPT][hapmap]
rs2708277	0.86[JPT][hapmap]
rs2708282	0.86[JPT][hapmap]
rs2710094	0.86[JPT][hapmap]
rs28522281	1.00[ASN][1000 genomes]
rs4443578	0.86[ASN][1000 genomes]
rs4725759	0.96[CEU][hapmap]
rs4725760	0.96[CEU][hapmap]
rs4725762	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4726908	0.96[CEU][hapmap]
rs4726909	1.00[CEU][hapmap]
rs4726910	0.96[CEU][hapmap]
rs4726911	0.96[CEU][hapmap]
rs55645581	0.92[EUR][1000 genomes]
rs55806438	0.88[EUR][1000 genomes]
rs55893822	0.88[EUR][1000 genomes]
rs56128998	0.96[EUR][1000 genomes]
rs59099493	0.96[EUR][1000 genomes]
rs6464851	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs66949315	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947567	1.00[CEU][hapmap]
rs6951293	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6966084	0.91[EUR][1000 genomes]
rs73168548	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73168563	0.89[EUR][1000 genomes]
rs73168568	0.88[EUR][1000 genomes]
rs73168569	0.88[EUR][1000 genomes]
rs73468147	0.89[ASN][1000 genomes]
rs73470220	0.89[ASN][1000 genomes]
rs7786651	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7793325	0.84[JPT][hapmap]
rs9640511	0.85[ASN][1000 genomes]
rs9691133	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2762708	chr7:147714781-147717262	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv2764042	chr7:147714781-147717262	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147709200-147717800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:147709600-147718400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:147713400-147718600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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