Variant report

Variant	rs17171542
Chromosome Location	chr7:39173056-39173057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17171541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365575	1.00[AFR][1000 genomes]
rs73365594	0.93[AFR][1000 genomes]
rs73373260	0.83[AFR][1000 genomes]
rs73373263	0.83[AFR][1000 genomes]
rs73373267	0.83[AFR][1000 genomes]
rs73382919	1.00[AMR][1000 genomes]
rs73382922	1.00[AMR][1000 genomes]
rs73382971	1.00[AMR][1000 genomes]
rs73382994	1.00[AMR][1000 genomes]
rs73384919	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887968	chr7:39123165-39198960	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830968	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv428163	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39172200-39173200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr7:39173000-39173400	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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