Variant report

Variant	rs17171732
Chromosome Location	chr7:40603556-40603557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16880239	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17171724	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17171729	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17171733	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171738	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171751	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17171752	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1859706	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2108189	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1030515	chr7:40501867-40634808	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40596000-40608400	Weak transcription	Aorta	Aorta
2	chr7:40599800-40604800	Weak transcription	Fetal Heart	heart
3	chr7:40603200-40604200	Weak transcription	Dnd41	blood
4	chr7:40603200-40609600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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