Variant report

Variant	rs17173770
Chromosome Location	chr7:150959944-150959945
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150957518..150961137-chr7:150961373..150964885,3	MCF-7	breast:
2	chr7:150940078..150941889-chr7:150957924..150960150,2	MCF-7	breast:
3	chr7:150959444..150963668-chr7:150965575..150968005,4	K562	blood:
4	chr7:150922261..150926651-chr7:150957590..150961100,5	K562	blood:
5	chr7:150954098..150959160-chr7:150959832..150962944,4	K562	blood:

Variant related genes	Relation type
ENSG00000082014	Chromatin interaction
ENSG00000033050	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10215896	0.85[ASN][1000 genomes]
rs11973301	0.85[JPT][hapmap]
rs219240	0.85[JPT][hapmap]
rs219245	0.85[JPT][hapmap]
rs219246	0.85[JPT][hapmap]
rs3789819	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3789821	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58352277	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977470	0.86[JPT][hapmap]
rs7783602	0.81[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs7799570	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
3	nsv465216	chr7:150951819-150991795	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv609036	chr7:150951819-150991795	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150950400-150973400	Weak transcription	Brain Substantia Nigra	brain
2	chr7:150950600-150961400	Weak transcription	Spleen	Spleen
3	chr7:150950600-150965200	Weak transcription	Brain Angular Gyrus	brain
4	chr7:150950600-150967600	Weak transcription	Pancreas	Pancrea
5	chr7:150951000-150965400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:150951000-150969800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:150951000-150970800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:150951600-150968000	Weak transcription	Brain Germinal Matrix	brain
9	chr7:150951800-150967600	Weak transcription	Fetal Brain Female	brain
10	chr7:150954000-150966600	Weak transcription	Brain Anterior Caudate	brain
11	chr7:150954000-150967200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr7:150954400-150960200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:150957600-150960000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:150957600-150960000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr7:150958800-150960000	Enhancers	Right Ventricle	heart
16	chr7:150958800-150960200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:150959000-150969400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr7:150959200-150969800	Weak transcription	Right Atrium	heart
19	chr7:150959400-150960400	Enhancers	Fetal Muscle Leg	muscle
20	chr7:150959600-150969000	Weak transcription	Fetal Lung	lung
21	chr7:150959600-150972800	Weak transcription	Ovary	ovary

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