Variant report

Variant	rs6977470
Chromosome Location	chr7:150966437-150966438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150964684..150966392-chr7:150966406..150968425,2	MCF-7	breast:
2	chr7:150965804..150968803-chr7:150979702..150982006,2	K562	blood:
3	chr7:150960408..150962210-chr7:150963702..150967987,4	K562	blood:
4	chr7:150959444..150963668-chr7:150965575..150968005,4	K562	blood:
5	chr7:150964746..150967806-chr7:150970946..150974318,3	K562	blood:
6	chr7:150962569..150964522-chr7:150964727..150967253,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082014	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11973301	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17173770	0.86[JPT][hapmap]
rs219240	1.00[JPT][hapmap]
rs219245	1.00[JPT][hapmap]
rs219246	1.00[JPT][hapmap]
rs2530456	0.82[ASN][1000 genomes]
rs3789818	0.85[JPT][hapmap]
rs3789819	0.80[ASN][1000 genomes]
rs6464136	0.95[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap]
rs6977603	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783318	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7783602	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7792624	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7799570	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
3	nsv465216	chr7:150951819-150991795	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv609036	chr7:150951819-150991795	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150950400-150973400	Weak transcription	Brain Substantia Nigra	brain
2	chr7:150950600-150967600	Weak transcription	Pancreas	Pancrea
3	chr7:150951000-150969800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:150951000-150970800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:150951600-150968000	Weak transcription	Brain Germinal Matrix	brain
6	chr7:150951800-150967600	Weak transcription	Fetal Brain Female	brain
7	chr7:150954000-150966600	Weak transcription	Brain Anterior Caudate	brain
8	chr7:150954000-150967200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:150959000-150969400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr7:150959200-150969800	Weak transcription	Right Atrium	heart
11	chr7:150959600-150969000	Weak transcription	Fetal Lung	lung
12	chr7:150959600-150972800	Weak transcription	Ovary	ovary
13	chr7:150960000-150969200	Weak transcription	Right Ventricle	heart
14	chr7:150960200-150973200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:150961400-150969000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:150963000-150969000	Weak transcription	Fetal Brain Male	brain
17	chr7:150963200-150969400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr7:150963600-150966600	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:150963600-150969400	Weak transcription	Esophagus	oesophagus
20	chr7:150964000-150967800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr7:150964000-150972000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:150965400-150966800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr7:150965400-150967800	Strong transcription	Fetal Stomach	stomach
24	chr7:150965400-150969200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:150965600-150966600	Weak transcription	Brain Angular Gyrus	brain
26	chr7:150965600-150968200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:150965600-150968400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr7:150965800-150966800	Weak transcription	Lung	lung
29	chr7:150965800-150968600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr7:150966000-150967400	Enhancers	Spleen	Spleen
31	chr7:150966200-150967600	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr7:150966200-150969000	Weak transcription	Fetal Intestine Small	intestine
33	chr7:150966200-150969400	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:150966400-150966600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:150966400-150968800	Weak transcription	Fetal Muscle Trunk	muscle

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