The 2.0 version of rSNPBase
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Variant report
Variant
rs17174382
Chromosome Location
chrX:91428116-91428117
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
No data
No data
No data
No data
Extended variants information (count: 4 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:2)
rs_ID
r
2
[population]
rs17174383
1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs4110681
1.00[GIH][hapmap]
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv432350
chrX:91158935-91590765
Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'
TF binding regionChromatin interactive region
2 gene(s)
inside rSNPs
diseases
2
esv3435339
chrX:91427773-91539017
Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription
Chromatin interactive region
n/a
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links